Rmu_sc0006889.1_g000023

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006889.1
OG0000414
Physical Location & Seq
Forward (+)
107676 .. 108940
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006889.1_g000023.1.cds

Sequence Viewer

Length: 1221 bp
atgatgtatgatgaaactgctgattcgtttacatggttatttgagacgtttttggaggcaatgtctaacaaggctctaaagtcaatttttaaggatcagaatgctgcaatggctaaagctgctgcaaatgtgatgcctaacacatatcacttgctttgcagatggcacataatgcaaaatgccattaagaaagcaagtagtatattcaagggtgatgaacgggtcaccaccttcttatcaaaatgtatgaataactatgaagaggaggatgagttcctagttgtggggaagcaatgcttaatgaatattgagaaatgggcaaaacagtatgtcaagtgggcatggtctgctggaatgcatagcacccaattaagtgagagtttcaatgctagcctaaaaccatatgttaagtcagactatgatgtggttcaatttttcaagcactttgatagattgctcaatgataagcgatataaagagttagaggtcgagtatgctttgtgctacaagttaccttctattgggatattttcttcaatggtgatcaaggctggaaatatttacactaaagctgtttttgaaaaattccagattcaatatgagaaggctcttgattacaacttagtcggatgtattcaagatggtgataacattgtgtataaagttgtctttaatggtcatccaaagaagagatgtgttagggtgaagaaagaccagactgtaccatgtagttgcaggttgtttgagattgaaggtattctgtgcctccatgcaataaaaatccttactaactacatgaatgtcaaagaaattccttatcagtatattctaaaaagatggacaagaaaagcaagatcagaaagagtgaaagacatgtatggccaagacatccaagtagataccaacctacaacaaacatcttggtacaagtctctaagttccatatcgaccaagatttcatctcaggcagctgagagagaagagacatttaagtttgttgttcagaaattgagagaactaagcaaagctattgaagacatgttatgttcaaaaatggatacattacatcttggtaaggatgaccagattacacctcctagcaatgatgtgattgagggtattaatctggccaaaagtaactcggataaggcaaaagttgttcaagccaagggattcaagaaaagggagagtgctcgaggaagaaaaaaaaaagaattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

406

Amino Acids

47.08

Weight (kDa)

9.15

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 726
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 2 cut(s) 880, 1128
AcsI RAATTY 2 cut(s) 584, 810
AfaI GTAC 2 cut(s) 723, 926
AfiI CCNNNNNNNGG 2 cut(s) 283, 521
AflIII ACRYGT 2 cut(s) 873, 1038
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 4 cut(s) 119, 572, 971, 1028
AluI AGCT 4 cut(s) 119, 572, 971, 1028
Alw21I GWGCWC 1 cut(s) 1195
Alw26I GTCTC 3 cut(s) 38, 936, 977
AlwI GGATC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 1194
AoxI GGCC 2 cut(s) 880, 1128
ApeKI GCWGC 4 cut(s) 104, 119, 122, 968
ApoI RAATTY 2 cut(s) 584, 810
AseI ATTAAT 1 cut(s) 1122
Asp700I GAANNNNTTC 1 cut(s) 756
AsuHPI GGTGA 5 cut(s) 217, 224, 553, 656, 715
AsuNHI GCTAGC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 1194
BalI TGGCCA 2 cut(s) 882, 1130
BbsI GAAGAC 1 cut(s) 1041
Bbv12I GWGCWC 1 cut(s) 1195
BbvI GCAGC 4 cut(s) 91, 106, 109, 980
BccI CCATC 3 cut(s) 156, 635, 831
BciVI GTATCC 1 cut(s) 1051
BclI TGATCA 1 cut(s) 543
BcoDI GTCTC 3 cut(s) 38, 936, 977
BfaI CTAG 3 cut(s) 278, 390, 1098
BfuAI ACCTGC 1 cut(s) 726
BfuI GTATCC 1 cut(s) 1051
BisI GCNGC 4 cut(s) 105, 120, 123, 969
BlsI GCNGC 4 cut(s) 106, 121, 124, 970
BmeT110I CYCGRG 1 cut(s) 1194
BmsI GCATC 1 cut(s) 123
BmtI GCTAGC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 1041
BsaJI CCNNGG 1 cut(s) 1167
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 257, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 521
Bse3DI GCAATG 4 cut(s) 66, 114, 299, 1108
BseDI CCNNGG 1 cut(s) 1167
BseGI GGATG 5 cut(s) 274, 635, 679, 888, 1084
BseLI CCNNNNNNNGG 2 cut(s) 283, 521
BseMI GCAATG 4 cut(s) 66, 114, 299, 1108
BseMII CTCAG 2 cut(s) 963, 977
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 4 cut(s) 91, 106, 109, 980
BshFI GGCC 2 cut(s) 882, 1130
BsiHKAI GWGCWC 1 cut(s) 1195
BsiHKCI CYCGRG 1 cut(s) 1194
BslI CCNNNNNNNGG 2 cut(s) 283, 521
BsmAI GTCTC 3 cut(s) 38, 936, 977
BsmBI CGTCTC 1 cut(s) 38
BsmI GAATGC 2 cut(s) 106, 360
BsnI GGCC 2 cut(s) 882, 1130
BsoBI CYCGRG 1 cut(s) 1194
Bsp1286I GDGCHC 1 cut(s) 1195
Bsp143I GATC 3 cut(s) 94, 543, 854
BspANI GGCC 2 cut(s) 882, 1130
BspCNI CTCAG 2 cut(s) 964, 976
BspMI ACCTGC 1 cut(s) 726
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 102
BsrDI GCAATG 4 cut(s) 66, 114, 299, 1108
BssECI CCNNGG 1 cut(s) 1167
BssMI GATC 3 cut(s) 94, 543, 854
BssT1I CCWWGG 1 cut(s) 1167
Bst4CI ACNGT 2 cut(s) 327, 721
Bst6I CTCTTC 3 cut(s) 255, 683, 975
BstAPI GCANNNNNTGC 2 cut(s) 172, 347
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 5 cut(s) 622, 935, 963, 972, 1019
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 5 cut(s) 274, 635, 679, 888, 1084
BstKTI GATC 3 cut(s) 97, 546, 857
BstMAI GTCTC 3 cut(s) 38, 936, 977
BstMBI GATC 3 cut(s) 94, 543, 854
BstMWI GCNNNNNNNGC 4 cut(s) 110, 119, 172, 347
BstNSI RCATGY 2 cut(s) 877, 1042
BstPI GGTNACC 1 cut(s) 223
BstV1I GCAGC 4 cut(s) 91, 106, 109, 980
BstV2I GAAGAC 1 cut(s) 1041
BsuI GTATCC 1 cut(s) 1051
BsuRI GGCC 2 cut(s) 882, 1130
BtsCI GGATG 5 cut(s) 274, 635, 679, 888, 1084
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 722, 925
CviAII CATG 7 cut(s) 33, 342, 726, 770, 796, 874, 1039
CviQI GTAC 2 cut(s) 722, 925
DdeI CTNAG 5 cut(s) 622, 935, 963, 972, 1019
DpnI GATC 3 cut(s) 96, 545, 856
DpnII GATC 3 cut(s) 94, 543, 854
EaeI YGGCCR 2 cut(s) 880, 1128
Eam1104I CTCTTC 3 cut(s) 255, 683, 975
EarI CTCTTC 3 cut(s) 255, 683, 975
Eco130I CCWWGG 1 cut(s) 1167
Eco88I CYCGRG 1 cut(s) 1194
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 1167
EcoT22I ATGCAT 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 1167
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 7 cut(s) 36, 345, 729, 773, 799, 877, 1042
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 7 cut(s) 32, 341, 725, 769, 795, 873, 1038
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 4 cut(s) 105, 120, 123, 969
FokI GGATG 5 cut(s) 281, 642, 666, 875, 1091
Fsp4HI GCNGC 4 cut(s) 105, 120, 123, 969
FspBI CTAG 3 cut(s) 278, 390, 1098
GluI GCNGC 4 cut(s) 105, 120, 123, 969
HaeIII GGCC 2 cut(s) 882, 1130
Hin1II CATG 7 cut(s) 36, 345, 729, 773, 799, 877, 1042
HinfI GANTC 3 cut(s) 23, 592, 1173
HphI GGTGA 5 cut(s) 217, 224, 553, 656, 715
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 6 cut(s) 99, 415, 629, 859, 1005, 1144
Hpy188III TCNNGA 4 cut(s) 589, 611, 638, 1177
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 241, 525, 598, 746
HpyCH4III ACNGT 2 cut(s) 327, 721
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 7 cut(s) 107, 125, 159, 175, 358, 735, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 119, 172, 347
HpyF3I CTNAG 5 cut(s) 622, 935, 963, 972, 1019
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 7 cut(s) 36, 345, 729, 773, 799, 877, 1042
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 3 cut(s) 94, 543, 854
LpnPI CCDG 8 cut(s) 336, 537, 602, 721, 728, 950, 1097, 1112
Lsp1109I GCAGC 4 cut(s) 91, 106, 109, 980
LweI GCATC 1 cut(s) 123
MaeI CTAG 3 cut(s) 278, 390, 1098
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 3 cut(s) 223, 510, 1136
MalI GATC 3 cut(s) 96, 545, 856
MboI GATC 3 cut(s) 94, 543, 854
MboII GAAGA 7 cut(s) 272, 525, 700, 718, 992, 1046, 1212
MhlI GDGCHC 1 cut(s) 1195
MlsI TGGCCA 2 cut(s) 882, 1130
MluCI AATT 7 cut(s) 84, 368, 431, 584, 810, 1007, 1214
MluNI TGGCCA 2 cut(s) 882, 1130
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 8 cut(s) 49, 256, 259, 478, 776, 1104, 1108, 1190
Mox20I TGGCCA 2 cut(s) 882, 1130
Mph1103I ATGCAT 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 756
MscI TGGCCA 2 cut(s) 882, 1130
MseI TTAA 8 cut(s) 90, 186, 299, 371, 408, 672, 990, 1122
Msp20I TGGCCA 2 cut(s) 882, 1130
MspA1I CMGCKG 1 cut(s) 971
Mva1269I GAATGC 2 cut(s) 106, 360
MwoI GCNNNNNNNGC 4 cut(s) 110, 119, 172, 347
NdeI CATATG 1 cut(s) 403
NdeII GATC 3 cut(s) 94, 543, 854
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 7 cut(s) 36, 345, 729, 773, 799, 877, 1042
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 360
NspI RCATGY 2 cut(s) 877, 1042
PaeR7I CTCGAG 1 cut(s) 1194
PciI ACATGT 2 cut(s) 873, 1038
PctI GAATGC 2 cut(s) 106, 360
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 3 cut(s) 23, 592, 1173
PkrI GCNGC 4 cut(s) 106, 121, 124, 970
PscI ACATGT 2 cut(s) 873, 1038
PshBI ATTAAT 1 cut(s) 1122
PspEI GGTNACC 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 1194
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 2 cut(s) 723, 926
RsaNI GTAC 2 cut(s) 722, 925
SaqAI TTAA 8 cut(s) 90, 186, 299, 371, 408, 672, 990, 1122
SatI GCNGC 4 cut(s) 105, 120, 123, 969
Sau3AI GATC 3 cut(s) 94, 543, 854
SduI GDGCHC 1 cut(s) 1195
SfaNI GCATC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 1194
SlaI CTCGAG 1 cut(s) 1194
SmlI CTYRAG 1 cut(s) 1194
SmoI CTYRAG 1 cut(s) 1194
Sse9I AATT 7 cut(s) 84, 368, 431, 584, 810, 1007, 1214
SspI AATATT 2 cut(s) 307, 559
SspMI CTAG 3 cut(s) 278, 390, 1098
StyI CCWWGG 1 cut(s) 1167
TaaI ACNGT 2 cut(s) 327, 721
TaiI ACGT 1 cut(s) 50
TaqI TCGA 3 cut(s) 489, 947, 1195
TasI AATT 7 cut(s) 84, 368, 431, 584, 810, 1007, 1214
TfiI GAWTC 3 cut(s) 23, 592, 1173
Tru1I TTAA 8 cut(s) 90, 186, 299, 371, 408, 672, 990, 1122
Tru9I TTAA 8 cut(s) 90, 186, 299, 371, 408, 672, 990, 1122
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 4 cut(s) 104, 119, 122, 968
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 7 cut(s) 27, 231, 263, 273, 317, 812, 948
VspI ATTAAT 1 cut(s) 1122
XapI RAATTY 2 cut(s) 584, 810
XceI RCATGY 2 cut(s) 877, 1042
XhoI CTCGAG 1 cut(s) 1194
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 3 cut(s) 278, 390, 1098
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.