Rh2DG505700

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000414
Physical Location & Seq
Reverse (-)
72929288 .. 72930682
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG505700.1

Sequence Viewer

Length: 543 bp
ATGAGTCATGATGAACTGCCTAATTCTTCACAAGGTGGGAGTGAGAGGATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAAAAGGCAAAAGGCTTGAAGAAGAAAAACAGTTGCAAAGGTCGCAAAAAAGGCCCCAAGGCTTGGCATGAGAATAAAGGCAAGGGAAAGAAAAAATCTTCTAGGAAAGATAATTCAATTCAAGAATCATATCAGGGTCAAGAAGTTGAACCATCGAAAAAGATAAATAAGAAATCATCTGATAAGGATCAATCAAAAATGTCTAGCAAGGATCAATCAGTACCTCAACAAACCCAGGATCAAGCTCAACCATCAAGAAAGAGAAATACAAGATCATCTAATAAGGATCAATCATTACCTCAAGGATCTCAGAATCAAGAAGCTGAATCTTCAAGAAAGAGACAAAAGAAATCCTCTACTGAGAATCAATCACTACCTCAAAACTCTCAGGATCAAGGAGCTCCACCATCAAGCAAGAGAAAGAAACAGTTGTTTACTCGTTTAGTTGGTTATCATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

180

Amino Acids

20.25

Weight (kDa)

10.16

Isoelectric Point (pI)

86.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AclWI GGATC 6 cut(s) 276, 300, 327, 375, 394, 480
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 8 cut(s) 56, 71, 83, 100, 198, 203, 230, 414
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 75, 326, 404, 482
AluI AGCT 4 cut(s) 75, 326, 404, 482
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 6 cut(s) 276, 300, 327, 375, 394, 480
AoxI GGCC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 484
BccI CCATC 4 cut(s) 43, 241, 340, 496
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 2 cut(s) 183, 285
Bme1390I CCNGG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 138, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 138, 315
BseGI GGATG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 404, 432, 482
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 415
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 3 cut(s) 403, 433, 481
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 6 cut(s) 276, 300, 327, 375, 394, 480
BssECI CCNNGG 2 cut(s) 138, 315
BssMI GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 113, 510
BstDEI CTNAG 3 cut(s) 390, 441, 468
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 7 cut(s) 271, 295, 322, 356, 370, 389, 475
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
BstMWI GCNNNNNNNGC 2 cut(s) 123, 132
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 1 cut(s) 54
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 8, 149
CviJI RGCY 7 cut(s) 75, 96, 135, 143, 326, 404, 482
CviKI_1 RGCY 7 cut(s) 75, 96, 135, 143, 326, 404, 482
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 3 cut(s) 390, 441, 468
DpnI GATC 7 cut(s) 270, 294, 321, 355, 369, 388, 474
DpnII GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
DraIII CACNNNGTG 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 11, 152
FaiI YATR 5 cut(s) 9, 150, 211, 537, 541
FatI CATG 2 cut(s) 7, 148
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 484
FspBI CTAG 2 cut(s) 183, 285
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 2 cut(s) 11, 152
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 5 cut(s) 4, 206, 394, 407, 445
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 2 cut(s) 262, 393
Hpy188III TCNNGA 8 cut(s) 8, 56, 203, 221, 336, 398, 414, 470
Hpy8I GTNNAC 1 cut(s) 516
HpyCH4III ACNGT 2 cut(s) 113, 510
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 132
HpyF3I CTNAG 3 cut(s) 390, 441, 468
Hsp92II CATG 2 cut(s) 11, 152
Kzo9I GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
LmnI GCTCC 2 cut(s) 479, 487
LpnPI CCDG 4 cut(s) 200, 302, 329, 455
MaeI CTAG 2 cut(s) 183, 285
MalI GATC 7 cut(s) 270, 294, 321, 355, 369, 388, 474
MboI GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
MboII GAAGA 5 cut(s) 18, 112, 115, 171, 402
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 4 cut(s) 22, 66, 193, 198
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 39, 315, 390, 445, 468
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 123, 132
NdeII GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
NlaIII CATG 2 cut(s) 11, 152
NlaIV GGNNCC 1 cut(s) 136
PagI TCATGA 1 cut(s) 7
PfeI GAWTC 4 cut(s) 206, 394, 407, 445
PflMI CCANNNNNTGG 1 cut(s) 144
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SacI GAGCTC 1 cut(s) 484
Sau3AI GATC 7 cut(s) 268, 292, 319, 353, 367, 386, 472
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 484
SetI ASST 9 cut(s) 37, 77, 124, 307, 328, 382, 406, 460, 484
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 4 cut(s) 22, 66, 193, 198
SspMI CTAG 2 cut(s) 183, 285
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 113, 510
TaqI TCGA 1 cut(s) 236
TasI AATT 4 cut(s) 22, 66, 193, 198
TfiI GAWTC 4 cut(s) 206, 394, 407, 445
TspDTI ATGAA 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 144
XspI CTAG 2 cut(s) 183, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.