Rmu_sc0000125.1_g000007

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000125.1
OG0000414
Physical Location & Seq
Forward (+)
18764 .. 19132
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000125.1_g000007.1.cds

Sequence Viewer

Length: 369 bp
atggggataaataaccatggtcagacaattgtgtttggagctgcattcttaagtgacgagattacagattcatttgtgtggttgttgaaagaatttttgaatgctatgccagagggtcctcctaaaatgattattgctgatcaagatacagccatggaaaaagctatttctgaagtcctcccagacacatttcaaagatattgtagctggcatatcttgaaaaagttttttgagaagcttgatgcaatcaaatacagagatcattatgatgaattcagaaattgcatttacccatctgagaatgcagaggagtttgacttcaaatggaaatcaattcttgcaaaacgtggattaagtggacataagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

122

Amino Acids

14.23

Weight (kDa)

5.53

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 92, 272
AcuI CTGAAG 1 cut(s) 192
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 5 cut(s) 88, 100, 194, 220, 322
AluBI AGCT 4 cut(s) 41, 164, 207, 238
AluI AGCT 4 cut(s) 41, 164, 207, 238
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 2 cut(s) 92, 272
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 301
BclI TGATCA 1 cut(s) 139
BfrI CTTAAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 16, 153
BseDI CCNNGG 2 cut(s) 16, 153
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 28
BsmI GAATGC 3 cut(s) 44, 106, 307
Bsp143I GATC 2 cut(s) 139, 259
Bsp19I CCATGG 2 cut(s) 16, 153
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 117
BspTI CTTAAG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 16, 153
BssMI GATC 2 cut(s) 139, 259
BssT1I CCWWGG 2 cut(s) 16, 153
BstAFI CTTAAG 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 16, 153
BstKTI GATC 2 cut(s) 142, 262
BstMBI GATC 2 cut(s) 139, 259
BstV1I GCAGC 1 cut(s) 28
BtgI CCRYGG 2 cut(s) 16, 153
Cac8I GCNNGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 2 cut(s) 17, 154
CviJI RGCY 5 cut(s) 41, 152, 164, 207, 238
CviKI_1 RGCY 5 cut(s) 41, 152, 164, 207, 238
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 141, 261
DpnII GATC 2 cut(s) 139, 259
Eco130I CCWWGG 2 cut(s) 16, 153
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 16, 153
ErhI CCWWGG 2 cut(s) 16, 153
FaeI CATG 2 cut(s) 20, 157
FaiI YATR 6 cut(s) 18, 107, 155, 213, 267, 363
FatI CATG 2 cut(s) 16, 153
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 20, 157
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 4 cut(s) 24, 172, 278, 298
Hpy188III TCNNGA 2 cut(s) 143, 217
Hpy8I GTNNAC 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 5 cut(s) 44, 245, 285, 305, 341
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 2 cut(s) 20, 157
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 139, 259
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 123, 193, 195
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 141, 261
MboI GATC 2 cut(s) 139, 259
MfeI CAATTG 1 cut(s) 27
MluCI AATT 5 cut(s) 27, 92, 272, 280, 333
MnlI CCTC 4 cut(s) 106, 129, 188, 301
MseI TTAA 2 cut(s) 50, 353
MslI CAYNNNNRTG 2 cut(s) 76, 267
MspCI CTTAAG 1 cut(s) 49
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 3 cut(s) 44, 106, 307
NcoI CCATGG 2 cut(s) 16, 153
NdeII GATC 2 cut(s) 139, 259
NlaIII CATG 2 cut(s) 20, 157
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 53
PctI GAATGC 3 cut(s) 44, 106, 307
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 76, 267
SaqAI TTAA 2 cut(s) 50, 353
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 139, 259
Sau96I GGNCC 1 cut(s) 116
SetI ASST 5 cut(s) 43, 166, 209, 240, 349
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 76, 267
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 5 cut(s) 27, 92, 272, 280, 333
StyI CCWWGG 2 cut(s) 16, 153
TaiI ACGT 1 cut(s) 349
TasI AATT 5 cut(s) 27, 92, 272, 280, 333
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 50, 353
Tru9I TTAA 2 cut(s) 50, 353
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 60, 285
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 92, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.