FvH4_3g31442

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000414
Physical Location & Seq
Forward (+)
25687182 .. 25690962
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31442.t1

Sequence Viewer

Length: 2493 bp
ATGGAAGAATCTGGCGAAGAAACTAACACTAGTTTGGAGCAATCGAAATCAGAAGAAGACATGGTTTGGAAACCTAAATATGACATGGAGTTTGATTCTGAGCAAGCCGCATACGACTTTTATAATGAGTATGGACGGAACGAAGGCTTTAGCATTAGAAAAGAAGTGTGTGCCAAGGATAAGAATCATGTACTCACCTCAAGGCTTTTTGTTTGTTGTAAAGAAGGTTTACGAGGGAAGGATAAGAGAGACGATTTGACCAAAAACCCAAGAGCACATACAAGGACCGGATGTGGAGCGCATATGGGCATTAGGTTGGTTAGGCGTACATGTAAATATTGTGTGTATCGTTTTCATGAAGAGCATAATCATCCGCTTGTGAAGCAAGAATGTGTGCATAGATTGCCATCTCAACGGAAAATGACAACCCCGGATGGTGCTTTTCTAGAATTGACCTCGAATTCAGGAGTTCCGTCAAAATCTGCATTTGAATTAATGAGTAAAGAAGCTGGTGGAAGGGAGTCATTGGGATTTACAAAGGAAGATCAAAAGAACTATCTTCGAACTGTCCGACAAAGAAAAATGAAATTTGGAGAAGCTGGTTATTTGATGGAATATTTTTCAAAGCAAACGTTGGAAAATCCTTCATTTTTTTATGAGATGCAACTGGACAGTGAGGAACAGATCACCAACATTTTCTGGGCAGATGCTAAAATGATAATGGATTATGCTATATTTGGAGATGTTGTAAGTTTTGATACAACTTACAAAATTAATGAAGCAAATCGACCATTAGCGGTGTTTGTTGGACTAAATCACCACAGGGAGACGATTATATTTGGAGCTGCTTTAATGTATGATGAGACTGCGGCATCTTTTATATGGTTGTTTAATACTTTTTTGAAGGCAATGTGTGGGAAGCCTCCTAGAACTTTTTTTACTGATCAAGATGCTGCTATAGCCATGGCTGTACTACATGTGATGCCTGATACGTACCATAGACTTTGTATATGGCATTTGATGCAAAATGCCTTGAAGAAAGTAGGTTTCTTATTCCGAAACTCTAATGGCGATGAAAACCAAGGTAATGTGCTCAACAAATTTCTTTATCAGATTGAGGAAGAGAATGAGTTTTTGAGTGCTTGGGAGTCCATGCTTGATGATTACAATGCACATGATGACCCTTGGTTGGCTGCGACATTTGCAATCAGAAAAAAATGGGTGCATGCATATGTGAAGTGGACATGGTCAGCAGGAATGGAAAGTACCCAACTTAGTGAAAGCTTTAATGCTACTTTGAAGGGCTATTTGAAATCAGACTACCAGTTGCCTGATTTTTTTACTCACTTTGAAAGAATGGTAGCCGATAAGCGGTATAAAGAATTGGAAGCCGAGTATGATTTGCAATTCCGGATTGTTCACTGCAAAATGGAGGTAATAATGTTGAAACATGCACGAGAAGTTTATACCAAAGCGATATTTAAATATTTTCAGGCTCAGTTTGAAGACTCTTTAAATTATTCCATCACGAAGTGTGTGTCAGATGAAAATTTTATCTTCACAGTTGTTAGGGATGGATTCACTAAGGAGCGGTTAGTGAAAAGAGAAGGAGAGTTTACTGTATCCTGCAGTTATAGAATGTTTGAGACTGAAGGTATCTTGTGTAGGCATGCTATCAAAGTCATGATAGAAGGCAGAGAAACTACACTAATAAAAAAGATTCCTGAGCAATATGTCTTAGAAAGGTGGACCAAAACTGCAAGAGTTGATAATATTGTGGAAGACATGCATGGGCACGAGATCGTAGAGAATCCAAGATTGAAACAAATTTCTCGAAATAGAAACTTGTGTTATAAATTTGTTCGAATAGCATCAAGGGCATCTGAGAGTGAGAAGGCATATGAGCTAGCAGTTATGGAAGCTGATAAATTAGCAAAGATTGTTGAAGATGTGTTACGTCTAGAAATAAACGGTGATAAAGATGTGGAAGATCAAGACCAAAATGTATTGGCAGATTGCTCTAATGCAAAGGGATTGAAAAAGAGACAAGCTACCCATCGTGGAAAACGCAGAGCTAAGGGAGACTTTGAAGCTGCATTAAGCAAAAGTAAAAAAAAGCCTTCTCAGGTTGCTAAAGTTCGGAATCATAGTGCGGCAATGAACCAATCTCATGCACCTTCTTCACATCAATCTCAGGTCATTGGGATTTCAACTGCTGGAAAGGGGATAGAGTTATGTAGTCAATCTTCATCGTCTCTTTCACAGTCATCTCAGGTATCTATCCACCCTCCTATGATGGTTGGTAATGATCAATATATGCAATTGCTCTGTCGTCCTTATAACATTCATGATTTGAATATGTCAAACGGAATGTTTTGGATGCCTTCTCAAGAATCCTCTGCGGCAAGTACACAAGCATATGTTCAATCAAATATCATAGGATTTCCATCTACATTGCAAGACCCAGGAATGTCAAATCATCAAGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

831

Amino Acids

95.71

Weight (kDa)

6.73

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 39 - 127 2e-19 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 214 - 319 1.7e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 249 - 343 2.8e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 123, 1854, 2340
AccBSI CCGCTC 1 cut(s) 1591
AccIII TCCGGA 1 cut(s) 1410
AciI CCGC 8 cut(s) 108, 374, 797, 869, 1372, 1591, 2153, 2402
AclI AACGTT 1 cut(s) 632
AcsI RAATTY 6 cut(s) 460, 587, 1100, 1549, 1827, 1856
AcuI CTGAAG 1 cut(s) 1671
AdeI CACNNNGTG 1 cut(s) 1533
AfaI GTAC 6 cut(s) 192, 328, 972, 995, 1267, 2410
AfiI CCNNNNNNNGG 2 cut(s) 1189, 1371
AflIII ACRYGT 2 cut(s) 329, 976
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 2464
Alw21I GWGCWC 3 cut(s) 277, 1095, 2490
Alw26I GTCTC 7 cut(s) 243, 821, 857, 1640, 2038, 2076, 2259
Aor13HI TCCGGA 1 cut(s) 1410
ApeKI GCWGC 4 cut(s) 845, 953, 1193, 2093
ApoI RAATTY 6 cut(s) 460, 587, 1100, 1549, 1827, 1856
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 1523, 1555
AseI ATTAAT 2 cut(s) 494, 774
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 285, 1749
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 4 cut(s) 187, 679, 809, 1985
AsuII TTCGAA 2 cut(s) 562, 1864
AsuNHI GCTAGC 1 cut(s) 1906
AvaII GGWCC 2 cut(s) 285, 1749
BaeGI GKGCMC 1 cut(s) 1797
BanII GRGCYC 1 cut(s) 2490
BarI GAAGNNNNNNTAC 4 cut(s) 1938, 1970, 2230, 2262
BauI CACGAG 2 cut(s) 1455, 1796
BbsI GAAGAC 3 cut(s) 63, 1512, 1788
Bbv12I GWGCWC 3 cut(s) 277, 1095, 2490
BbvI GCAGC 4 cut(s) 832, 940, 1180, 2080
BccI CCATC 8 cut(s) 415, 428, 604, 1532, 1568, 2064, 2290, 2455
BciT130I CCWGG 1 cut(s) 2466
BciVI GTATCC 1 cut(s) 1633
BclI TGATCA 2 cut(s) 943, 2308
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 7 cut(s) 243, 821, 857, 1640, 2038, 2076, 2259
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 6 cut(s) 30, 446, 927, 1907, 1961, 2491
BfmI CTRYAG 2 cut(s) 957, 1627
BfuI GTATCC 1 cut(s) 1633
BisI GCNGC 8 cut(s) 108, 846, 870, 954, 1194, 2094, 2154, 2403
BlsI GCNGC 8 cut(s) 109, 847, 871, 955, 1195, 2095, 2155, 2404
Bme1390I CCNGG 2 cut(s) 431, 2466
Bme18I GGWCC 2 cut(s) 285, 1749
BmgT120I GGNCC 2 cut(s) 285, 1749
BmrFI CCNGG 2 cut(s) 431, 2466
BmsI GCATC 9 cut(s) 651, 697, 881, 940, 972, 1011, 1880, 1889, 2370
BmtI GCTAGC 1 cut(s) 1910
BpiI GAAGAC 3 cut(s) 63, 1512, 1788
Bpu10I CCTNAGC 2 cut(s) 1725, 2076
Bpu14I TTCGAA 2 cut(s) 562, 1864
BpuEI CTTGAG 2 cut(s) 184, 2373
BpuMI CCSGG 1 cut(s) 431
BsaAI YACGTR 1 cut(s) 993
BsaBI GATNNNNATC 3 cut(s) 183, 406, 2446
BsaJI CCNNGG 6 cut(s) 174, 429, 963, 1081, 1184, 2464
BsaWI WCCGGW 2 cut(s) 287, 1410
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 2 cut(s) 1189, 1371
Bse1I ACTGG 2 cut(s) 672, 1324
Bse3DI GCAATG 3 cut(s) 915, 2163, 2453
Bse8I GATNNNNATC 3 cut(s) 183, 406, 2446
BseAI TCCGGA 1 cut(s) 1410
BseBI CCWGG 1 cut(s) 2466
BseDI CCNNGG 6 cut(s) 174, 429, 963, 1081, 1184, 2464
BseGI GGATG 5 cut(s) 296, 370, 439, 1579, 2385
BseJI GATNNNNATC 3 cut(s) 183, 406, 2446
BseLI CCNNNNNNNGG 2 cut(s) 1189, 1371
BseMI GCAATG 3 cut(s) 915, 2163, 2453
BseMII CTCAG 7 cut(s) 90, 1511, 1716, 1875, 2138, 2207, 2285
BseNI ACTGG 2 cut(s) 672, 1324
BseSI GKGCMC 1 cut(s) 1797
BseXI GCAGC 4 cut(s) 832, 940, 1180, 2080
BsiHKAI GWGCWC 3 cut(s) 277, 1095, 2490
BsiSI CCGG 3 cut(s) 288, 431, 1411
BslI CCNNNNNNNGG 2 cut(s) 1189, 1371
BsmAI GTCTC 7 cut(s) 243, 821, 857, 1640, 2038, 2076, 2259
BsmBI CGTCTC 3 cut(s) 243, 821, 2259
Bsp119I TTCGAA 2 cut(s) 562, 1864
Bsp1286I GDGCHC 4 cut(s) 277, 1095, 1797, 2490
Bsp13I TCCGGA 1 cut(s) 1410
Bsp143I GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 8 cut(s) 108, 374, 797, 869, 1372, 1591, 2153, 2402
BspCNI CTCAG 7 cut(s) 91, 1510, 1717, 1876, 2137, 2206, 2284
BspEI TCCGGA 1 cut(s) 1410
BspHI TCATGA 3 cut(s) 355, 1683, 2347
BspMAI CTGCAG 1 cut(s) 1631
BspOI GCTAGC 1 cut(s) 1910
BspQI GCTCTTC 1 cut(s) 354
BspT104I TTCGAA 2 cut(s) 562, 1864
BsrBI CCGCTC 1 cut(s) 1591
BsrDI GCAATG 3 cut(s) 915, 2163, 2453
BsrI ACTGG 2 cut(s) 672, 1324
BssECI CCNNGG 6 cut(s) 174, 429, 963, 1081, 1184, 2464
BssMI GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
BssSI CACGAG 2 cut(s) 1455, 1796
BssT1I CCWWGG 4 cut(s) 174, 963, 1081, 1184
Bst2BI CACGAG 2 cut(s) 1455, 1796
Bst2UI CCWGG 1 cut(s) 2466
Bst4CI ACNGT 6 cut(s) 568, 674, 1564, 1621, 1973, 2265
Bst6I CTCTTC 2 cut(s) 354, 1116
BstAPI GCANNNNNTGC 2 cut(s) 403, 1021
BstBAI YACGTR 1 cut(s) 993
BstBI TTCGAA 2 cut(s) 562, 1864
BstC8I GCNNGC 4 cut(s) 105, 1227, 1671, 1908
BstDSI CCRYGG 1 cut(s) 963
BstF5I GGATG 5 cut(s) 296, 370, 439, 1579, 2385
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 6 cut(s) 547, 687, 946, 1803, 1993, 2311
BstMAI GTCTC 7 cut(s) 243, 821, 857, 1640, 2038, 2076, 2259
BstMBI GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
BstMWI GCNNNNNNNGC 6 cut(s) 382, 403, 959, 1021, 1202, 1877
BstNI CCWGG 1 cut(s) 2466
BstNSI RCATGY 6 cut(s) 333, 980, 1229, 1454, 1673, 1789
BstSCI CCNGG 2 cut(s) 429, 2464
BstSFI CTRYAG 2 cut(s) 957, 1627
BstSLI GKGCMC 1 cut(s) 1797
BstSNI TACGTA 1 cut(s) 993
BstV1I GCAGC 4 cut(s) 832, 940, 1180, 2080
BstV2I GAAGAC 3 cut(s) 63, 1512, 1788
BsuI GTATCC 1 cut(s) 1633
BtgI CCRYGG 1 cut(s) 963
BtgZI GCGATG 1 cut(s) 1086
BtsCI GGATG 5 cut(s) 296, 370, 439, 1579, 2385
BtsI GCAGTG 1 cut(s) 1420
BtsIMutI CAGTG 2 cut(s) 679, 1420
Cac8I GCNNGC 4 cut(s) 105, 1227, 1671, 1908
CciI TCATGA 3 cut(s) 355, 1683, 2347
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 285, 1749
Csp6I GTAC 6 cut(s) 191, 327, 971, 994, 1266, 2409
CviQI GTAC 6 cut(s) 191, 327, 971, 994, 1266, 2409
DpnI GATC 6 cut(s) 546, 686, 945, 1802, 1992, 2310
DpnII GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
DraI TTTAAA 2 cut(s) 1483, 1515
DraIII CACNNNGTG 1 cut(s) 1533
Eam1104I CTCTTC 2 cut(s) 354, 1116
EarI CTCTTC 2 cut(s) 354, 1116
Ecl136II GAGCTC 1 cut(s) 2488
Eco105I TACGTA 1 cut(s) 993
Eco130I CCWWGG 4 cut(s) 174, 963, 1081, 1184
Eco24I GRGCYC 1 cut(s) 2490
Eco47I GGWCC 2 cut(s) 285, 1749
Eco53kI GAGCTC 1 cut(s) 2488
Eco57I CTGAAG 1 cut(s) 1671
EcoICRI GAGCTC 1 cut(s) 2488
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 2464
EcoT14I CCWWGG 4 cut(s) 174, 963, 1081, 1184
EcoT22I ATGCAT 2 cut(s) 1231, 1791
EcoT38I GRGCYC 1 cut(s) 2490
ErhI CCWWGG 4 cut(s) 174, 963, 1081, 1184
Esp3I CGTCTC 3 cut(s) 243, 821, 2259
FalI AAGNNNNNCTT 2 cut(s) 2069, 2101
FauNDI CATATG 4 cut(s) 303, 1231, 1900, 2419
FbaI TGATCA 2 cut(s) 943, 2308
Fnu4HI GCNGC 8 cut(s) 108, 846, 870, 954, 1194, 2094, 2154, 2403
FokI GGATG 5 cut(s) 303, 357, 446, 1586, 2392
FriOI GRGCYC 1 cut(s) 2490
Fsp4HI GCNGC 8 cut(s) 108, 846, 870, 954, 1194, 2094, 2154, 2403
FspBI CTAG 6 cut(s) 30, 446, 927, 1907, 1961, 2491
GlaI GCGC 1 cut(s) 300
GluI GCNGC 8 cut(s) 108, 846, 870, 954, 1194, 2094, 2154, 2403
HapII CCGG 3 cut(s) 288, 431, 1411
HhaI GCGC 1 cut(s) 301
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 1282
HpaII CCGG 3 cut(s) 288, 431, 1411
HphI GGTGA 4 cut(s) 187, 679, 809, 1985
Hpy166II GTNNAC 6 cut(s) 230, 1242, 1420, 1617, 1749, 2411
Hpy8I GTNNAC 6 cut(s) 230, 1242, 1420, 1617, 1749, 2411
HpyCH4III ACNGT 6 cut(s) 568, 674, 1564, 1621, 1973, 2265
HpyCH4IV ACGT 3 cut(s) 632, 992, 1957
HpyF10VI GCNNNNNNNGC 6 cut(s) 382, 403, 959, 1021, 1202, 1877
HpySE526I ACGT 3 cut(s) 632, 992, 1957
HspAI GCGC 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 1410
Ksp22I TGATCA 2 cut(s) 943, 2308
Kzo9I GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 4 cut(s) 37, 296, 842, 1588
Lsp1109I GCAGC 4 cut(s) 832, 940, 1180, 2080
LweI GCATC 9 cut(s) 651, 697, 881, 940, 972, 1011, 1880, 1889, 2370
MaeI CTAG 6 cut(s) 30, 446, 927, 1907, 1961, 2491
MaeII ACGT 3 cut(s) 632, 992, 1957
MaeIII GTNAC 1 cut(s) 1953
MalI GATC 6 cut(s) 546, 686, 945, 1802, 1992, 2310
MbiI CCGCTC 1 cut(s) 1591
MboI GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
MfeI CAATTG 1 cut(s) 2321
MhlI GDGCHC 4 cut(s) 277, 1095, 1797, 2490
MlyI GAGTC 3 cut(s) 530, 1157, 1502
MmeI TCCRAC 3 cut(s) 595, 615, 787
MnlI CCTC 9 cut(s) 208, 227, 466, 670, 933, 1111, 1426, 2298, 2407
Mph1103I ATGCAT 2 cut(s) 1231, 1791
MroI TCCGGA 1 cut(s) 1410
MseI TTAA 8 cut(s) 494, 774, 851, 891, 1287, 1482, 1514, 2099
MslI CAYNNNNRTG 1 cut(s) 1230
MspI CCGG 3 cut(s) 288, 431, 1411
MspR9I CCNGG 2 cut(s) 431, 2466
MunI CAATTG 1 cut(s) 2321
MvaI CCWGG 1 cut(s) 2466
MwoI GCNNNNNNNGC 6 cut(s) 382, 403, 959, 1021, 1202, 1877
NciI CCSGG 1 cut(s) 431
NcoI CCATGG 1 cut(s) 963
NdeI CATATG 4 cut(s) 303, 1231, 1900, 2419
NdeII GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
NheI GCTAGC 1 cut(s) 1906
NmeAIII GCCGAG 1 cut(s) 1417
NsiI ATGCAT 2 cut(s) 1231, 1791
NspI RCATGY 6 cut(s) 333, 980, 1229, 1454, 1673, 1789
NspV TTCGAA 2 cut(s) 562, 1864
PaeI GCATGC 2 cut(s) 1229, 1673
PagI TCATGA 3 cut(s) 355, 1683, 2347
PciI ACATGT 2 cut(s) 329, 976
PciSI GCTCTTC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PfeI GAWTC 8 cut(s) 8, 95, 184, 1578, 1720, 1810, 2143, 2393
PflFI GACNNNGTC 1 cut(s) 1246
PkrI GCNGC 8 cut(s) 109, 847, 871, 955, 1195, 2095, 2155, 2404
PleI GAGTC 3 cut(s) 529, 1156, 1502
PpsI GAGTC 3 cut(s) 529, 1156, 1502
Ppu21I YACGTR 1 cut(s) 993
PscI ACATGT 2 cut(s) 329, 976
PshBI ATTAAT 2 cut(s) 494, 774
PsiI TTATAA 3 cut(s) 123, 1854, 2340
Psp124BI GAGCTC 1 cut(s) 2490
Psp1406I AACGTT 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 2464
PspGI CCWGG 1 cut(s) 2464
PspPI GGNCC 2 cut(s) 285, 1749
PsrI GAACNNNNNNTAC 2 cut(s) 922, 954
PstI CTGCAG 1 cut(s) 1631
PsyI GACNNNGTC 1 cut(s) 1246
RsaI GTAC 6 cut(s) 192, 328, 972, 995, 1267, 2410
RsaNI GTAC 6 cut(s) 191, 327, 971, 994, 1266, 2409
RseI CAYNNNNRTG 1 cut(s) 1230
SacI GAGCTC 1 cut(s) 2490
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 8 cut(s) 494, 774, 851, 891, 1287, 1482, 1514, 2099
SatI GCNGC 8 cut(s) 108, 846, 870, 954, 1194, 2094, 2154, 2403
Sau3AI GATC 6 cut(s) 544, 684, 943, 1800, 1990, 2308
Sau96I GGNCC 2 cut(s) 285, 1749
SchI GAGTC 3 cut(s) 530, 1157, 1502
ScrFI CCNGG 2 cut(s) 431, 2466
SduI GDGCHC 4 cut(s) 277, 1095, 1797, 2490
SfaNI GCATC 9 cut(s) 651, 697, 881, 940, 972, 1011, 1880, 1889, 2370
SfcI CTRYAG 2 cut(s) 957, 1627
SfuI TTCGAA 2 cut(s) 562, 1864
SinI GGWCC 2 cut(s) 285, 1749
SmiI ATTTAAAT 1 cut(s) 1483
SmiMI CAYNNNNRTG 1 cut(s) 1230
SmlI CTYRAG 2 cut(s) 199, 2388
SmoI CTYRAG 2 cut(s) 199, 2388
SnaBI TACGTA 1 cut(s) 993
SpeI ACTAGT 1 cut(s) 29
SphI GCATGC 2 cut(s) 1229, 1673
SsiI CCGC 8 cut(s) 108, 374, 797, 869, 1372, 1591, 2153, 2402
SspI AATATT 4 cut(s) 338, 617, 1487, 1774
SspMI CTAG 6 cut(s) 30, 446, 927, 1907, 1961, 2491
SstI GAGCTC 1 cut(s) 2490
StyD4I CCNGG 2 cut(s) 429, 2464
StyI CCWWGG 4 cut(s) 174, 963, 1081, 1184
SwaI ATTTAAAT 1 cut(s) 1483
TaaI ACNGT 6 cut(s) 568, 674, 1564, 1621, 1973, 2265
TaiI ACGT 3 cut(s) 635, 995, 1960
TaqI TCGA 6 cut(s) 44, 458, 562, 787, 1834, 1864
TatI WGTACW 3 cut(s) 190, 970, 2408
TauI GCSGC 4 cut(s) 110, 872, 2156, 2405
TfiI GAWTC 8 cut(s) 8, 95, 184, 1578, 1720, 1810, 2143, 2393
Tru1I TTAA 8 cut(s) 494, 774, 851, 891, 1287, 1482, 1514, 2099
Tru9I TTAA 8 cut(s) 494, 774, 851, 891, 1287, 1482, 1514, 2099
TscAI CASTG 2 cut(s) 679, 1427
TseI GCWGC 4 cut(s) 845, 953, 1193, 2093
TspGWI ACGGA 4 cut(s) 151, 430, 462, 2382
TspRI CASTG 2 cut(s) 679, 1427
Tth111I GACNNNGTC 1 cut(s) 1246
VpaK11BI GGWCC 2 cut(s) 285, 1749
VspI ATTAAT 2 cut(s) 494, 774
XapI RAATTY 6 cut(s) 460, 587, 1100, 1549, 1827, 1856
XbaI TCTAGA 2 cut(s) 445, 1960
XceI RCATGY 6 cut(s) 333, 980, 1229, 1454, 1673, 1789
XspI CTAG 6 cut(s) 30, 446, 927, 1907, 1961, 2491
Zsp2I ATGCAT 2 cut(s) 1231, 1791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.