Rmu_ssc0000432.1_g000095

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0000414
Physical Location & Seq
Reverse (-)
332435 .. 333647
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000095.1.cds

Sequence Viewer

Length: 618 bp
atgatcattgattatggccaatttggggatgttgttagttttgatacaacatacaagattaacaaatctaatcgacctcttgctgtgttcattggattcaatcaccaccatgagactattatatttggggtggctttaatgtatgatgaaacagcagattcatttatatggttgtttgagaccttttttagggcaatgtctggaaaggctccaaagacaatatttacatatcaagatgctgcaatggcaaaagctcttcgacatgttatgccagatgcatatcataggctttgcaaatggcatatgatgcaaaatgccataaagcatgggagtagtttcttgacagaggatggtggaatcacaagtattttgtcaaggttcatggaaaatattgaggaggaaaatgagtttatatctgcttgggatgctatgctcgataaatatggtgcgcgtgacaatacttgctgcctgtggcagtcttgggtcgcgtcacggccagcagcggcggcgaagagcccagtttcgtttaaccccgatttggttccaagcttgatatctcgagctactggtcacgaatccttcccaaacttcatcctcgagctcgcctcaacctcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

205

Amino Acids

23.2

Weight (kDa)

5.71

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 451, 488
AciI CCGC 2 cut(s) 503, 506
AcoI YGGCCR 2 cut(s) 16, 494
AfiI CCNNNNNNNGG 3 cut(s) 25, 189, 538
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 4 cut(s) 254, 549, 563, 601
AluI AGCT 4 cut(s) 254, 549, 563, 601
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 2 cut(s) 107, 173
Ama87I CYCGRG 2 cut(s) 558, 596
AoxI GGCC 2 cut(s) 16, 494
ApeKI GCWGC 3 cut(s) 239, 465, 500
AspLEI GCGC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 2 cut(s) 558, 596
BalI TGGCCA 1 cut(s) 18
BanII GRGCYC 2 cut(s) 518, 603
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 3 cut(s) 226, 452, 512
BccI CCATC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 509
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 107, 173
BisI GCNGC 5 cut(s) 240, 466, 501, 504, 507
BlsI GCNGC 5 cut(s) 241, 467, 502, 505, 508
BmeT110I CYCGRG 2 cut(s) 558, 596
BmiI GGNNCC 2 cut(s) 210, 543
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 4 cut(s) 226, 265, 297, 415
BmuI ACTGGG 1 cut(s) 512
BplI GAGNNNNNCTC 1 cut(s) 590
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 189, 538
Bse1I ACTGG 2 cut(s) 518, 571
Bse3DI GCAATG 2 cut(s) 201, 249
Bse8I GATNNNNATC 1 cut(s) 279
BseGI GGATG 4 cut(s) 34, 355, 430, 591
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 25, 189, 538
BseMI GCAATG 2 cut(s) 201, 249
BseNI ACTGG 2 cut(s) 518, 571
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 3 cut(s) 226, 452, 512
Bsh1236I CGCG 2 cut(s) 451, 488
BshFI GGCC 2 cut(s) 18, 496
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 2 cut(s) 558, 596
BslI CCNNNNNNNGG 3 cut(s) 25, 189, 538
BsmAI GTCTC 2 cut(s) 107, 173
BsnI GGCC 2 cut(s) 18, 496
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 2 cut(s) 558, 596
Bsp1286I GDGCHC 2 cut(s) 518, 603
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 503, 506
BspANI GGCC 2 cut(s) 18, 496
BspFNI CGCG 2 cut(s) 451, 488
BspLI GGNNCC 2 cut(s) 210, 543
BspQI GCTCTTC 2 cut(s) 261, 506
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 201, 249
BsrI ACTGG 2 cut(s) 518, 571
BssMI GATC 1 cut(s) 3
Bst6I CTCTTC 2 cut(s) 261, 506
BstAPI GCANNNNNTGC 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 498, 603
BstENI CCTNNNNNAGG 1 cut(s) 187
BstF5I GGATG 4 cut(s) 34, 355, 430, 591
BstFNI CGCG 2 cut(s) 451, 488
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 107, 173
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 4 cut(s) 245, 307, 425, 506
BstNSI RCATGY 1 cut(s) 266
BstUI CGCG 2 cut(s) 451, 488
BstV1I GCAGC 3 cut(s) 226, 452, 512
BsuRI GGCC 2 cut(s) 18, 496
BtsCI GGATG 4 cut(s) 34, 355, 430, 591
Cac8I GCNNGC 2 cut(s) 498, 603
CfoI GCGC 1 cut(s) 451
CseI GACGC 1 cut(s) 477
CviAII CATG 4 cut(s) 110, 263, 326, 382
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 2 cut(s) 16, 494
Eam1104I CTCTTC 2 cut(s) 261, 506
EarI CTCTTC 2 cut(s) 261, 506
Ecl136II GAGCTC 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 518, 603
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 555
Eco53kI GAGCTC 1 cut(s) 601
Eco88I CYCGRG 2 cut(s) 558, 596
EcoICRI GAGCTC 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 280
EcoT38I GRGCYC 2 cut(s) 518, 603
FaeI CATG 4 cut(s) 113, 266, 329, 385
FatI CATG 4 cut(s) 109, 262, 325, 381
FauNDI CATATG 1 cut(s) 303
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 240, 466, 501, 504, 507
FokI GGATG 4 cut(s) 41, 362, 437, 578
FriOI GRGCYC 2 cut(s) 518, 603
Fsp4HI GCNGC 5 cut(s) 240, 466, 501, 504, 507
GlaI GCGC 1 cut(s) 450
GluI GCNGC 5 cut(s) 240, 466, 501, 504, 507
HaeIII GGCC 2 cut(s) 18, 496
HgaI GACGC 1 cut(s) 477
HhaI GCGC 1 cut(s) 451
Hin1II CATG 4 cut(s) 113, 266, 329, 385
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 4 cut(s) 96, 158, 357, 575
HphI GGTGA 1 cut(s) 95
Hpy188III TCNNGA 6 cut(s) 201, 233, 340, 558, 572, 615
HpyAV CCTTC 1 cut(s) 589
HpyCH4V TGCA 4 cut(s) 242, 278, 294, 310
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 307, 425, 506
Hsp92II CATG 4 cut(s) 113, 266, 329, 385
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 2 cut(s) 261, 506
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 186, 285, 482, 510, 531, 552
Lsp1109I GCAGC 3 cut(s) 226, 452, 512
LweI GCATC 4 cut(s) 226, 265, 297, 415
MaeIII GTNAC 3 cut(s) 452, 489, 569
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 248, 523
MhlI GDGCHC 2 cut(s) 518, 603
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 18
MnlI CCTC 6 cut(s) 87, 340, 388, 391, 605, 616
Mox20I TGGCCA 1 cut(s) 18
Mph1103I ATGCAT 1 cut(s) 280
MscI TGGCCA 1 cut(s) 18
MseI TTAA 3 cut(s) 60, 137, 528
MslI CAYNNNNRTG 2 cut(s) 108, 166
Msp20I TGGCCA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 503
MvnI CGCG 2 cut(s) 451, 488
MwoI GCNNNNNNNGC 4 cut(s) 245, 307, 425, 506
NdeI CATATG 1 cut(s) 303
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 113, 266, 329, 385
NlaIV GGNNCC 2 cut(s) 210, 543
NmuCI GTSAC 3 cut(s) 452, 489, 569
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 266
PaeR7I CTCGAG 2 cut(s) 558, 596
PciI ACATGT 1 cut(s) 262
PciSI GCTCTTC 2 cut(s) 261, 506
PfeI GAWTC 4 cut(s) 96, 158, 357, 575
PkrI GCNGC 5 cut(s) 241, 467, 502, 505, 508
PscI ACATGT 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 210, 543
PspXI VCTCGAGB 1 cut(s) 596
RseI CAYNNNNRTG 2 cut(s) 108, 166
SacI GAGCTC 1 cut(s) 603
SapI GCTCTTC 2 cut(s) 261, 506
SaqAI TTAA 3 cut(s) 60, 137, 528
SatI GCNGC 5 cut(s) 240, 466, 501, 504, 507
Sau3AI GATC 1 cut(s) 3
SduI GDGCHC 2 cut(s) 518, 603
SetI ASST 8 cut(s) 79, 185, 256, 380, 551, 565, 603, 614
SfaNI GCATC 4 cut(s) 226, 265, 297, 415
Sfr274I CTCGAG 2 cut(s) 558, 596
SlaI CTCGAG 2 cut(s) 558, 596
SmiMI CAYNNNNRTG 2 cut(s) 108, 166
SmlI CTYRAG 2 cut(s) 558, 596
SmoI CTYRAG 2 cut(s) 558, 596
Sse9I AATT 1 cut(s) 20
SsiI CCGC 2 cut(s) 503, 506
SspI AATATT 2 cut(s) 222, 391
SstI GAGCTC 1 cut(s) 603
TaqI TCGA 5 cut(s) 73, 259, 435, 559, 597
TasI AATT 1 cut(s) 20
TauI GCSGC 2 cut(s) 506, 509
TfiI GAWTC 4 cut(s) 96, 158, 357, 575
Tru1I TTAA 3 cut(s) 60, 137, 528
Tru9I TTAA 3 cut(s) 60, 137, 528
TseFI GTSAC 3 cut(s) 452, 489, 569
TseI GCWGC 3 cut(s) 239, 465, 500
Tsp45I GTSAC 3 cut(s) 452, 489, 569
TspDTI ATGAA 5 cut(s) 79, 150, 162, 370, 580
XagI CCTNNNNNAGG 1 cut(s) 187
XceI RCATGY 1 cut(s) 266
XhoI CTCGAG 2 cut(s) 558, 596
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.