Rmu_sc0004542.1_g000002

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004542.1
OG0000414
Physical Location & Seq
Reverse (-)
1701 .. 2288
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004542.1_g000002.1.cds

Sequence Viewer

Length: 588 bp
atgtcagggggtcctcctaaaatgataattacttatcaagatccagccatggaaaaagctatttctgaagtcctcccagacacatttcatagatattgtagctggcatatcttgagaaagttttctgagaagcttgatgcaatcaaattcagagatcactacgatgaattcagaaattgcatttattcatctgataatgcagaggagtttgacttcaaatggaaatcagttcttgcaaaaagtggattaagtggacataagtggctgcaatcaatttatgaaattcggtttagatgtgtgccggcttatatgaaccacattttctcagctggcatgtcaagtagtcaacgagcagaaagtgcgcattccttttttaaggattatgtttctcataaaaatactctagtggacttcatggttcagtttagtcggggtcttttacacaaacggcatgaggagttgatttcagatcacattgacatcaatgagaagccaagatttaagtgccccattaagatggaaaagaaaatggctgctatttatacgttgatttcagatcatattgacaacaatgaagccaagatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

195

Amino Acids

22.9

Weight (kDa)

8.27

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 363
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 3 cut(s) 146, 167, 282
AcuI CTGAAG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 4 cut(s) 59, 102, 133, 329
AluI AGCT 4 cut(s) 59, 102, 133, 329
AlwI GGATC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 265, 533
ApoI RAATTY 3 cut(s) 146, 167, 282
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 252, 520
BccI CCATC 1 cut(s) 511
BceAI ACGGC 1 cut(s) 464
BfaI CTAG 1 cut(s) 404
BisI GCNGC 2 cut(s) 266, 534
BlsI GCNGC 2 cut(s) 267, 535
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 117, 339
BseRI GAGGAG 2 cut(s) 218, 470
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 2 cut(s) 252, 520
BsiSI CCGG 1 cut(s) 302
BsmI GAATGC 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 4 cut(s) 40, 154, 469, 556
Bsp19I CCATGG 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 118, 338
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 4 cut(s) 40, 154, 469, 556
BssT1I CCWWGG 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 104, 303, 331
BstDEI CTNAG 2 cut(s) 126, 325
BstDSI CCRYGG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 4 cut(s) 43, 157, 472, 559
BstMBI GATC 4 cut(s) 40, 154, 469, 556
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 252, 520
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 104, 303, 331
CfoI GCGC 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 11
CviAII CATG 4 cut(s) 49, 334, 415, 452
DdeI CTNAG 2 cut(s) 126, 325
DpnI GATC 4 cut(s) 42, 156, 471, 558
DpnII GATC 4 cut(s) 40, 154, 469, 556
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 4 cut(s) 52, 337, 418, 455
FatI CATG 4 cut(s) 48, 333, 414, 451
Fnu4HI GCNGC 2 cut(s) 266, 534
Fsp4HI GCNGC 2 cut(s) 266, 534
FspAI RTGCGCAY 1 cut(s) 363
FspBI CTAG 1 cut(s) 404
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 1 cut(s) 363
GluI GCNGC 2 cut(s) 266, 534
HapII CCGG 1 cut(s) 302
HhaI GCGC 1 cut(s) 364
Hin1II CATG 4 cut(s) 52, 337, 418, 455
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HindIII AAGCTT 1 cut(s) 131
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 3 cut(s) 254, 347, 409
Hpy188I TCNGA 7 cut(s) 67, 127, 152, 173, 193, 469, 556
Hpy188III TCNNGA 2 cut(s) 38, 112
Hpy8I GTNNAC 3 cut(s) 254, 347, 409
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 140, 180, 200, 236, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 2 cut(s) 126, 325
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 4 cut(s) 52, 337, 418, 455
HspAI GCGC 1 cut(s) 362
KroI GCCGGC 1 cut(s) 301
KroNI GCCGGC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 40, 154, 469, 556
LpnPI CCDG 5 cut(s) 57, 88, 90, 315, 315
Lsp1109I GCAGC 2 cut(s) 252, 520
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 404
MaeII ACGT 1 cut(s) 545
MalI GATC 4 cut(s) 42, 156, 471, 558
MboI GATC 4 cut(s) 40, 154, 469, 556
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 6 cut(s) 27, 146, 167, 175, 273, 282
MnlI CCTC 4 cut(s) 24, 83, 196, 448
MroNI GCCGGC 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 5 cut(s) 248, 375, 501, 513, 586
MslI CAYNNNNRTG 2 cut(s) 162, 515
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 359
NaeI GCCGGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 48
NdeII GATC 4 cut(s) 40, 154, 469, 556
NgoMIV GCCGGC 1 cut(s) 301
NlaIII CATG 4 cut(s) 52, 337, 418, 455
NlaIV GGNNCC 1 cut(s) 12
NsbI TGCGCA 1 cut(s) 363
NspI RCATGY 1 cut(s) 337
PctI GAATGC 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 267, 535
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 11
PspPPI RGGWCCY 1 cut(s) 11
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 162, 515
SaqAI TTAA 5 cut(s) 248, 375, 501, 513, 586
SatI GCNGC 2 cut(s) 266, 534
Sau3AI GATC 4 cut(s) 40, 154, 469, 556
Sau96I GGNCC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 509
SetI ASST 5 cut(s) 61, 104, 135, 331, 548
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 162, 515
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 6 cut(s) 27, 146, 167, 175, 273, 282
SspMI CTAG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 548
TasI AATT 6 cut(s) 27, 146, 167, 175, 273, 282
Tru1I TTAA 5 cut(s) 248, 375, 501, 513, 586
Tru9I TTAA 5 cut(s) 248, 375, 501, 513, 586
TseI GCWGC 2 cut(s) 265, 533
TspDTI ATGAA 7 cut(s) 77, 177, 180, 294, 326, 403, 588
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 3 cut(s) 146, 167, 282
XceI RCATGY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.