FvH4_7g13761

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000414
Physical Location & Seq
Forward (+)
12301047 .. 12303222
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13761.t1

Sequence Viewer

Length: 1038 bp
ATGTCGGGAGATTCCACTCTGGGACAAGAATCCTTTCATCGACCACCATCAATCATGTCAGCTATGGCGTTAAGAGATATTACAAATATTGGTGGAGAATCTAGCTTGGCTGACACAAGTTGCAAACCGAAATTCGGTATGGAATTTGACTCTGAAGAAGCTGCTTATATATTTTACAATGAGTATGCAAGGAAGATGGGATTCAGTGTTAGAAAAGAACAGGTGGTGAAGAACAAGAAAACCGGTGAGGTGTTATCAAAGTTCATAGACAGCTATGAAGAAGAAGATGAGTTTCTAGCTGCTTGGGATGCGATGCTCACGGAGTATAATGTGCATGGAGATGAATGGTTCAAAAGAATTTTTGAAGTAAGGAGGAAATGGGCTTATGCATATGTTAGAGGCCAATGGTGCGCAGGATTGCAGACCACCCAGATTAGTGAAAGTATCAATGGTGATTTGAAAGATTATCTCCAATCAGACCATAATTTGGTCGAATTTTTCAAGCATTTTGAGAGAGTTGTAAATGATAAGCGTTACAAAGAGTTAGAAACAGAATATGCTTTGTGTCAGAAGATACCTCAAGTTCAGAGACCTATTAAAATGTTGATTGAAGCAGGGAATGTCTACACAAAGATTATATTTGAGGAATTTCAAAATGAGTTTGTGAGCGCTCTTGATTTTTATATAAAAACTATTGTTGATACTGGAGAAGACATTGTGTATACGGTTGGTGATCTGGACACTTCCAAGGAATTTCGTGTTATAAGGAAAAAGAGTGACAATTATGTCTCTTGTTGTTGCAAGTTGTTTGAGATGAATGGGGTGTTGTGTGGTCATGCTATAAAGATCTTAAGGGAGGTAATGAATGTAAAGGTAATTCCCAGTGAGTATATGCATGGAAGGGACATACAAGTAGATACTAAGCTGCAACAGACCACTTGGTATAGGTCTTTATGCTCTATTTTTACAAAAATATCTTCAAGGGGTGCTGAGAGCAAGGAAACTTATGAAGTTGCATTTGAACATGCAAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

346

Amino Acids

40.04

Weight (kDa)

5.38

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
AasI GACNNNNNNGTC 1 cut(s) 785
Acc16I TGCGCA 1 cut(s) 412
AccB7I CCANNNNNTGG 1 cut(s) 487
AccI GTMKAC 2 cut(s) 624, 722
AcsI RAATTY 6 cut(s) 131, 143, 357, 494, 647, 752
AcuI CTGAAG 1 cut(s) 174
AfeI AGCGCT 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 134, 487
AflII CTTAAG 1 cut(s) 850
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 8 cut(s) 352, 365, 460, 502, 611, 653, 981, 1022
AluBI AGCT 6 cut(s) 62, 105, 161, 273, 299, 925
AluI AGCT 6 cut(s) 62, 105, 161, 273, 299, 925
Alw26I GTCTC 2 cut(s) 583, 793
Aor51HI AGCGCT 1 cut(s) 670
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 3 cut(s) 161, 299, 925
ApoI RAATTY 6 cut(s) 131, 143, 357, 494, 647, 752
AsiGI ACCGGT 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 2 cut(s) 413, 671
AsuHPI GGTGA 4 cut(s) 238, 257, 464, 743
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 148, 286, 912
BccI CCATC 2 cut(s) 55, 190
BcoDI GTCTC 2 cut(s) 583, 793
BfaI CTAG 2 cut(s) 102, 296
BfoI RGCGCY 1 cut(s) 672
BfrI CTTAAG 1 cut(s) 850
BglII AGATCT 1 cut(s) 846
BisI GCNGC 3 cut(s) 162, 300, 926
BlsI GCNGC 3 cut(s) 163, 301, 927
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 2 cut(s) 298, 303
BmuI ACTGGG 1 cut(s) 876
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 747
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 487
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 709, 882
BseDI CCNNGG 1 cut(s) 747
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 134, 487
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 2 cut(s) 709, 882
BseXI GCAGC 3 cut(s) 148, 286, 912
BshFI GGCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 242
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 36, 917
BslI CCNNNNNNNGG 2 cut(s) 134, 487
BsmAI GTCTC 2 cut(s) 583, 793
BsmFI GGGAC 2 cut(s) 36, 917
BsnI GGCC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 583
Bsp143I GATC 2 cut(s) 733, 846
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 982
BspTI CTTAAG 1 cut(s) 850
BspTNI GGTCTC 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 709, 882
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 747
BssMI GATC 2 cut(s) 733, 846
BssNAI GTATAC 1 cut(s) 723
BssT1I CCWWGG 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 723
Bst4CI ACNGT 1 cut(s) 727
BstAFI CTTAAG 1 cut(s) 850
BstDEI CTNAG 2 cut(s) 921, 990
BstF5I GGATG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 2 cut(s) 413, 671
BstKTI GATC 2 cut(s) 736, 849
BstMAI GTCTC 2 cut(s) 583, 793
BstMBI GATC 2 cut(s) 733, 846
BstMWI GCNNNNNNNGC 2 cut(s) 308, 408
BstNSI RCATGY 1 cut(s) 1028
BstV1I GCAGC 3 cut(s) 148, 286, 912
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 846
BstYI RGATCY 1 cut(s) 846
BstZ17I GTATAC 1 cut(s) 723
BsuRI GGCC 1 cut(s) 402
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 211, 889
CfoI GCGC 2 cut(s) 413, 671
Cfr10I RCCGGY 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 5 cut(s) 55, 335, 836, 896, 1025
CviJI RGCY 9 cut(s) 62, 105, 110, 161, 273, 299, 383, 402, 925
CviKI_1 RGCY 9 cut(s) 62, 105, 110, 161, 273, 299, 383, 402, 925
DdeI CTNAG 2 cut(s) 921, 990
DpnI GATC 2 cut(s) 735, 848
DpnII GATC 2 cut(s) 733, 846
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
Eco130I CCWWGG 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 583
Eco47III AGCGCT 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 2 cut(s) 391, 897
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 5 cut(s) 58, 338, 839, 899, 1028
FaqI GGGAC 2 cut(s) 36, 917
FatI CATG 5 cut(s) 54, 334, 835, 895, 1024
FauNDI CATATG 1 cut(s) 391
FblI GTMKAC 2 cut(s) 624, 722
Fnu4HI GCNGC 3 cut(s) 162, 300, 926
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 3 cut(s) 162, 300, 926
FspBI CTAG 2 cut(s) 102, 296
FspI TGCGCA 1 cut(s) 412
GlaI GCGC 2 cut(s) 412, 670
GluI GCNGC 3 cut(s) 162, 300, 926
GsuI CTGGAG 1 cut(s) 726
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 1 cut(s) 402
HapII CCGG 1 cut(s) 243
HhaI GCGC 2 cut(s) 413, 671
Hin1II CATG 5 cut(s) 58, 338, 839, 899, 1028
Hin6I GCGC 2 cut(s) 411, 669
HinP1I GCGC 2 cut(s) 411, 669
HinfI GANTC 5 cut(s) 11, 29, 98, 149, 201
HpaII CCGG 1 cut(s) 243
HphI GGTGA 4 cut(s) 238, 257, 464, 743
Hpy166II GTNNAC 2 cut(s) 625, 723
Hpy188I TCNGA 4 cut(s) 154, 478, 570, 588
Hpy188III TCNNGA 3 cut(s) 6, 674, 737
Hpy8I GTNNAC 2 cut(s) 625, 723
HpyAV CCTTC 1 cut(s) 894
HpyCH4III ACNGT 1 cut(s) 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 408
HpyF3I CTNAG 2 cut(s) 921, 990
Hsp92II CATG 5 cut(s) 58, 338, 839, 899, 1028
HspAI GCGC 2 cut(s) 411, 669
Kzo9I GATC 2 cut(s) 733, 846
LpnPI CCDG 9 cut(s) 5, 206, 256, 399, 443, 600, 690, 722, 895
Lsp1109I GCAGC 3 cut(s) 148, 286, 912
LweI GCATC 2 cut(s) 298, 303
MaeI CTAG 2 cut(s) 102, 296
MaeIII GTNAC 2 cut(s) 533, 776
MalI GATC 2 cut(s) 735, 848
MboI GATC 2 cut(s) 733, 846
MboII GAAGA 9 cut(s) 167, 205, 241, 290, 293, 296, 583, 722, 969
MflI RGATCY 1 cut(s) 846
MluCI AATT 9 cut(s) 131, 143, 357, 484, 494, 647, 752, 781, 876
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 6 cut(s) 241, 366, 392, 588, 637, 850
Mph1103I ATGCAT 2 cut(s) 391, 897
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 3 cut(s) 71, 597, 851
MslI CAYNNNNRTG 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 850
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 308, 408
NdeI CATATG 1 cut(s) 391
NdeII GATC 2 cut(s) 733, 846
NlaIII CATG 5 cut(s) 58, 338, 839, 899, 1028
NmuCI GTSAC 1 cut(s) 776
NsbI TGCGCA 1 cut(s) 412
NsiI ATGCAT 2 cut(s) 391, 897
NspI RCATGY 1 cut(s) 1028
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 4 cut(s) 11, 29, 98, 201
PflMI CCANNNNNTGG 1 cut(s) 487
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 163, 301, 927
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PsiI TTATAA 1 cut(s) 764
PsuI RGATCY 1 cut(s) 846
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 3 cut(s) 71, 597, 851
SatI GCNGC 3 cut(s) 162, 300, 926
Sau3AI GATC 2 cut(s) 733, 846
SchI GAGTC 1 cut(s) 143
SfaNI GCATC 2 cut(s) 298, 303
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 579, 850
SmoI CTYRAG 2 cut(s) 579, 850
Sse9I AATT 9 cut(s) 131, 143, 357, 484, 494, 647, 752, 781, 876
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 102, 296
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 727
TaqI TCGA 2 cut(s) 40, 492
TasI AATT 9 cut(s) 131, 143, 357, 484, 494, 647, 752, 781, 876
TfiI GAWTC 4 cut(s) 11, 29, 98, 201
Tru1I TTAA 3 cut(s) 71, 597, 851
Tru9I TTAA 3 cut(s) 71, 597, 851
TscAI CASTG 2 cut(s) 211, 889
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 3 cut(s) 161, 299, 925
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 7 cut(s) 26, 253, 291, 357, 830, 878, 1023
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 2 cut(s) 211, 889
Van91I CCANNNNNTGG 1 cut(s) 487
Vha464I CTTAAG 1 cut(s) 850
XapI RAATTY 6 cut(s) 131, 143, 357, 494, 647, 752
XceI RCATGY 1 cut(s) 1028
XmiI GTMKAC 2 cut(s) 624, 722
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 102, 296
Zsp2I ATGCAT 2 cut(s) 391, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.