Rmu_sc0000221.1_g000020

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000221.1
OG0000414
Physical Location & Seq
Reverse (-)
103110 .. 104300
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000221.1_g000020.1.cds

Sequence Viewer

Length: 1191 bp
atggataatgcattgggtgcaacagatgttaatgtagagaattttgattttgatttggaattggattggaaaccaagaaaaggaatggagtttgattctgaacaagcagcttatgacttctacaatagatatggaggaaaagaggggtttagtattagaagggagagtcatgctaagaataagaaaactggtgaaatcactttaagagtatttgtttgttgtaaggaaggtattcgatccaaagataagagggattacatgattagaaaatccagagcaaagacacgaacaggttgccatgctgaactttgtattaaattgaataggaagaacaataagttctttgttacccattttgttgaagagcacaatcatcctcttgtggtgaaagaatgttcccacatgcttccttcgcaacggaaagtacaagactgtcaaggcattgatatagacttagcacacgattctggaattggtgtcacgtctctatatgagttgatgggtaagcaagccggtggaagagatgctgtggggtatacaaaacaagatgtgaaaaattaccttagatcaaagagacaaagaagcttggagtatggagaagctggatatattatgaaatatttttcagaccaaacattggaaaacccttcattctaccatgctatgcaattagacagtgaggagcaaataacaaacttattttgggcagatgctaaaatgatcattgattatggccaatttggggatgttgttagttttgatacgacatacaagattaacaaatctaatcgacctcttgctgtgttcgttggattcaatcaccaccatgagactattatatttggggtggttttaatgtatgatgaaacagcagattcatttatatggttgtttgggaccttttttagggcaatgtctggaaaggctccaaagacaatatttacagatcaagatgctgcaatggcaaaggctcttcgacatgttatgccagatgcatatcacaggctttgcaaatggcatatgatgcaaaattccataaagcatgggagtagttttttgacagaggatggtggaatcacaagtattttgtcaaggttcatagaaaatattgaggaggaagatgagtttatatctgcttgggatgctatgcttgataaatatggtgcgcctgacagtacttatatgatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

396

Amino Acids

45.62

Weight (kDa)

6.22

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 536
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 2 cut(s) 40, 1030
AfaI GTAC 2 cut(s) 426, 1177
AfiI CCNNNNNNNGG 4 cut(s) 80, 637, 742, 906
AflIII ACRYGT 1 cut(s) 979
AgsI TTSAA 3 cut(s) 322, 362, 817
AjiI CACGTC 1 cut(s) 483
AluBI AGCT 3 cut(s) 110, 585, 602
AluI AGCT 3 cut(s) 110, 585, 602
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 3 cut(s) 489, 568, 824
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 733
ApeKI GCWGC 2 cut(s) 107, 956
ApoI RAATTY 2 cut(s) 40, 1030
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 1168
AspS9I GGNCC 1 cut(s) 897
AsuHPI GGTGA 3 cut(s) 203, 397, 812
AvaII GGWCC 1 cut(s) 897
BalI TGGCCA 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 119, 943
BccI CCATC 2 cut(s) 493, 1061
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BclI TGATCA 1 cut(s) 720
BcoDI GTCTC 3 cut(s) 489, 568, 824
BisI GCNGC 2 cut(s) 108, 957
BlsI GCNGC 2 cut(s) 109, 958
BmcAI AGTACT 1 cut(s) 1177
Bme18I GGWCC 1 cut(s) 897
BmgBI CACGTC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 897
BmiI GGNNCC 2 cut(s) 898, 927
BmsI GCATC 6 cut(s) 514, 700, 943, 982, 1014, 1132
BsaBI GATNNNNATC 1 cut(s) 996
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 637, 742, 906
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 2 cut(s) 918, 966
Bse8I GATNNNNATC 1 cut(s) 996
BseGI GGATG 4 cut(s) 373, 751, 1072, 1147
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 4 cut(s) 80, 637, 742, 906
BseMI GCAATG 2 cut(s) 918, 966
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 695, 1127
BseXI GCAGC 2 cut(s) 119, 943
BshFI GGCC 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 910
BslI CCNNNNNNNGG 4 cut(s) 80, 637, 742, 906
BsmAI GTCTC 3 cut(s) 489, 568, 824
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 910
BsnI GGCC 1 cut(s) 735
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 4 cut(s) 236, 566, 720, 946
BspANI GGCC 1 cut(s) 735
BspLI GGNNCC 2 cut(s) 898, 927
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 2 cut(s) 357, 978
BsrDI GCAATG 2 cut(s) 918, 966
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 512
BssMI GATC 4 cut(s) 236, 566, 720, 946
BssNAI GTATAC 1 cut(s) 537
Bst1107I GTATAC 1 cut(s) 537
Bst4CI ACNGT 3 cut(s) 434, 677, 1175
Bst6I CTCTTC 3 cut(s) 357, 514, 978
BstAPI GCANNNNNTGC 2 cut(s) 17, 1024
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 174, 454, 563
BstENI CCTNNNNNAGG 1 cut(s) 904
BstF5I GGATG 4 cut(s) 373, 751, 1072, 1147
BstHHI GCGC 1 cut(s) 1168
BstKTI GATC 4 cut(s) 239, 569, 723, 949
BstMAI GTCTC 3 cut(s) 489, 568, 824
BstMBI GATC 4 cut(s) 236, 566, 720, 946
BstMWI GCNNNNNNNGC 5 cut(s) 17, 412, 962, 1024, 1142
BstNSI RCATGY 2 cut(s) 406, 983
BstV1I GCAGC 2 cut(s) 119, 943
BstZ17I GTATAC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 735
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 4 cut(s) 373, 751, 1072, 1147
BtsIMutI CAGTG 1 cut(s) 682
Cac8I GCNNGC 1 cut(s) 510
CfoI GCGC 1 cut(s) 1168
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 897
Csp6I GTAC 2 cut(s) 425, 1176
CviAII CATG 8 cut(s) 170, 259, 299, 403, 659, 827, 980, 1043
CviJI RGCY 8 cut(s) 110, 512, 585, 602, 735, 926, 971, 1006
CviKI_1 RGCY 8 cut(s) 110, 512, 585, 602, 735, 926, 971, 1006
CviQI GTAC 2 cut(s) 425, 1176
DdeI CTNAG 3 cut(s) 174, 454, 563
DpnI GATC 4 cut(s) 238, 568, 722, 948
DpnII GATC 4 cut(s) 236, 566, 720, 946
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 3 cut(s) 357, 514, 978
EarI CTCTTC 3 cut(s) 357, 514, 978
Eco47I GGWCC 1 cut(s) 897
EcoNI CCTNNNNNAGG 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 897
EcoT22I ATGCAT 2 cut(s) 13, 997
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 8 cut(s) 173, 262, 302, 406, 662, 830, 983, 1046
FaqI GGGAC 1 cut(s) 910
FatI CATG 8 cut(s) 169, 258, 298, 402, 658, 826, 979, 1042
FauNDI CATATG 1 cut(s) 1020
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 2 cut(s) 108, 957
FokI GGATG 4 cut(s) 360, 758, 1079, 1154
Fsp4HI GCNGC 2 cut(s) 108, 957
GlaI GCGC 1 cut(s) 1167
GluI GCNGC 2 cut(s) 108, 957
HaeIII GGCC 1 cut(s) 735
HapII CCGG 1 cut(s) 513
HhaI GCGC 1 cut(s) 1168
Hin1II CATG 8 cut(s) 173, 262, 302, 406, 662, 830, 983, 1046
Hin6I GCGC 1 cut(s) 1166
HinP1I GCGC 1 cut(s) 1166
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 6 cut(s) 95, 166, 464, 813, 875, 1074
HpaII CCGG 1 cut(s) 513
HphI GGTGA 3 cut(s) 203, 397, 812
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 2 cut(s) 100, 628
Hpy188III TCNNGA 4 cut(s) 273, 468, 918, 950
Hpy8I GTNNAC 1 cut(s) 537
HpyAV CCTTC 4 cut(s) 153, 221, 420, 657
HpyCH4III ACNGT 3 cut(s) 434, 677, 1175
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 7 cut(s) 11, 20, 667, 959, 995, 1011, 1027
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 412, 962, 1024, 1142
HpyF3I CTNAG 3 cut(s) 174, 454, 563
HpySE526I ACGT 1 cut(s) 482
Hsp92II CATG 8 cut(s) 173, 262, 302, 406, 662, 830, 983, 1046
HspAI GCGC 1 cut(s) 1166
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 4 cut(s) 236, 566, 720, 946
LguI GCTCTTC 2 cut(s) 357, 978
LmnI GCTCC 2 cut(s) 682, 931
Lsp1109I GCAGC 2 cut(s) 119, 943
LweI GCATC 6 cut(s) 514, 700, 943, 982, 1014, 1132
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 346, 478
MalI GATC 4 cut(s) 238, 568, 722, 948
MboI GATC 4 cut(s) 236, 566, 720, 946
MboII GAAGA 5 cut(s) 340, 374, 531, 965, 1130
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 8 cut(s) 40, 59, 317, 471, 556, 668, 737, 1030
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 790
MnlI CCTC 9 cut(s) 128, 136, 243, 387, 673, 804, 1057, 1105, 1108
Mox20I TGGCCA 1 cut(s) 735
Mph1103I ATGCAT 2 cut(s) 13, 997
MroXI GAANNNNTTC 1 cut(s) 231
MscI TGGCCA 1 cut(s) 735
MseI TTAA 6 cut(s) 30, 203, 315, 777, 854, 1189
MslI CAYNNNNRTG 2 cut(s) 825, 883
Msp20I TGGCCA 1 cut(s) 735
MspI CCGG 1 cut(s) 513
MwoI GCNNNNNNNGC 5 cut(s) 17, 412, 962, 1024, 1142
NdeI CATATG 1 cut(s) 1020
NdeII GATC 4 cut(s) 236, 566, 720, 946
NlaIII CATG 8 cut(s) 173, 262, 302, 406, 662, 830, 983, 1046
NlaIV GGNNCC 2 cut(s) 898, 927
NmuCI GTSAC 1 cut(s) 478
NsiI ATGCAT 2 cut(s) 13, 997
NspI RCATGY 2 cut(s) 406, 983
PciI ACATGT 1 cut(s) 979
PciSI GCTCTTC 2 cut(s) 357, 978
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 5 cut(s) 95, 464, 813, 875, 1074
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 2 cut(s) 109, 958
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PpuMI RGGWCCY 1 cut(s) 897
PscI ACATGT 1 cut(s) 979
Psp5II RGGWCCY 1 cut(s) 897
PspN4I GGNNCC 2 cut(s) 898, 927
PspPI GGNCC 1 cut(s) 897
PspPPI RGGWCCY 1 cut(s) 897
RsaI GTAC 2 cut(s) 426, 1177
RsaNI GTAC 2 cut(s) 425, 1176
RseI CAYNNNNRTG 2 cut(s) 825, 883
SapI GCTCTTC 2 cut(s) 357, 978
SaqAI TTAA 6 cut(s) 30, 203, 315, 777, 854, 1189
SatI GCNGC 2 cut(s) 108, 957
Sau3AI GATC 4 cut(s) 236, 566, 720, 946
Sau96I GGNCC 1 cut(s) 897
ScaI AGTACT 1 cut(s) 1177
SchI GAGTC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 6 cut(s) 514, 700, 943, 982, 1014, 1132
SinI GGWCC 1 cut(s) 897
SmiMI CAYNNNNRTG 2 cut(s) 825, 883
Sse9I AATT 8 cut(s) 40, 59, 317, 471, 556, 668, 737, 1030
SspI AATATT 3 cut(s) 620, 939, 1108
TaaI ACNGT 3 cut(s) 434, 677, 1175
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 235, 790, 976
TasI AATT 8 cut(s) 40, 59, 317, 471, 556, 668, 737, 1030
TatI WGTACW 2 cut(s) 424, 1175
TfiI GAWTC 5 cut(s) 95, 464, 813, 875, 1074
Tru1I TTAA 6 cut(s) 30, 203, 315, 777, 854, 1189
Tru9I TTAA 6 cut(s) 30, 203, 315, 777, 854, 1189
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 107, 956
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 5 cut(s) 629, 639, 867, 879, 1087
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 897
XagI CCTNNNNNAGG 1 cut(s) 904
XapI RAATTY 2 cut(s) 40, 1030
XceI RCATGY 2 cut(s) 406, 983
XmiI GTMKAC 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 1177
Zsp2I ATGCAT 2 cut(s) 13, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.