Rroxscaffold_5G00365300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000414
Physical Location & Seq
Forward (+)
46796627 .. 46809918
13292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365300.1

Sequence Viewer

Length: 762 bp
ATGAGGATTATTCCGGATTTGATTCCCGATAATGAGGGGAGATTCCACCTCGTGCATTTGGCACATGAAAATGGAAAATTACGCTCGGACACTACCTTGAGCTACGGTGAGTCCGTAGCCGCCGCCTACGCCATCGAGGCCGATGAAGCTGCATACCCAAGACGTGGGGATGGTCGTGGAAGCTCTCACCCACGAAAGAATCGTTGGGTGCACCGAGGAAGCTCCGAGGAGGAAACTCCCAAGGATATGCCGGTTTCGAGTAGTAGTGGATCTTCGGGAAGACGGGGCCCGCACCCTACACTTGTTTTGCTTGTGGCCAACTCCGGACACACCAAAGTTCGCTGCCCGTTTGTTAACAACTCACAAGGAGCGTCTTCGGCTCGGGATTCCGGAATCCGAGGCCGCTCGATCACTATCGACCCGGATATCACCAACACCATATCGACCACCGAACCCTACTCGGCGGCGGGAGATTCCACCTCGTGCATTTGGCACATGAAAGTGGAAAAGTCTTTGCTTTGTAGACTTCAACTGGACGAGCGTCTTCGGCTCGGGATTCCGAATCCGAGGCCAGCTCGATCACTATCGACCCGGATATCACCAACACCATATCGACCACCGAACCCTACTCGGCGGCAGTACCAACCACCTCAACCGCCGGCGGTGAGGTATGACCAGCAGATCACCGCACCACGACCGCCAACCGGGCAAATCGAGGAAGAAACCGTGGAGGACGCAATCGGGGAGAACGTGGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.83

Weight (kDa)

8.47

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 523
AccIII TCCGGA 3 cut(s) 13, 323, 389
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 315
AdeI CACNNNGTG 2 cut(s) 52, 483
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 2 cut(s) 164, 704
AgsI TTSAA 1 cut(s) 530
AjiI CACGTC 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 5 cut(s) 102, 149, 183, 222, 575
AluI AGCT 5 cut(s) 102, 149, 183, 222, 575
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 2 cut(s) 381, 551
Aor13HI TCCGGA 3 cut(s) 13, 323, 389
AoxI GGCC 5 cut(s) 138, 286, 315, 400, 569
ApaI GGGCCC 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 149, 342
AspS9I GGNCC 2 cut(s) 286, 287
AsuC2I CCSGG 3 cut(s) 422, 592, 706
AsuHPI GGTGA 6 cut(s) 119, 179, 421, 591, 676, 676
AvaI CYCGRG 2 cut(s) 381, 551
BaeGI GKGCMC 2 cut(s) 213, 290
BalI TGGCCA 1 cut(s) 317
BanII GRGCYC 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BauI CACGAG 2 cut(s) 50, 481
BbsI GAAGAC 3 cut(s) 286, 366, 536
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 136, 329
BccI CCATC 2 cut(s) 140, 164
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BcnI CCSGG 3 cut(s) 422, 592, 706
BglI GCCNNNNNGGC 2 cut(s) 137, 706
BisI GCNGC 7 cut(s) 120, 123, 150, 343, 403, 465, 635
BlsI GCNGC 7 cut(s) 121, 124, 151, 344, 404, 466, 636
Bme1390I CCNGG 3 cut(s) 422, 592, 706
BmeT110I CYCGRG 2 cut(s) 381, 551
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 286, 287
BmiI GGNNCC 2 cut(s) 287, 288
BmrFI CCNGG 3 cut(s) 422, 592, 706
BoxI GACNNNNGTC 1 cut(s) 540
BpiI GAAGAC 3 cut(s) 286, 366, 536
BplI GAGNNNNNCTC 2 cut(s) 559, 591
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 3 cut(s) 422, 592, 706
BsaBI GATNNNNATC 2 cut(s) 413, 583
BsaJI CCNNGG 6 cut(s) 214, 225, 240, 397, 566, 726
BsaWI WCCGGW 3 cut(s) 13, 323, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 704
Bse118I RCCGGY 2 cut(s) 250, 658
Bse1I ACTGG 1 cut(s) 537
Bse8I GATNNNNATC 2 cut(s) 413, 583
BseAI TCCGGA 3 cut(s) 13, 323, 389
BseDI CCNNGG 6 cut(s) 214, 225, 240, 397, 566, 726
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 2 cut(s) 413, 583
BseLI CCNNNNNNNGG 2 cut(s) 164, 704
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 2 cut(s) 213, 290
BseXI GCAGC 2 cut(s) 136, 329
Bsh1285I CGRYCG 1 cut(s) 698
BshFI GGCC 5 cut(s) 140, 288, 317, 402, 571
BsiEI CGRYCG 1 cut(s) 698
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 2 cut(s) 381, 551
BsiSI CCGG 8 cut(s) 14, 251, 324, 390, 422, 592, 659, 705
BslI CCNNNNNNNGG 2 cut(s) 164, 704
BsnI GGCC 5 cut(s) 140, 288, 317, 402, 571
BsoBI CYCGRG 2 cut(s) 381, 551
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 213, 290
Bsp13I TCCGGA 3 cut(s) 13, 323, 389
Bsp143I GATC 4 cut(s) 269, 408, 578, 681
BspANI GGCC 5 cut(s) 140, 288, 317, 402, 571
BspEI TCCGGA 3 cut(s) 13, 323, 389
BspLI GGNNCC 2 cut(s) 287, 288
BspPI GGATC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 405
BsrFI RCCGGY 2 cut(s) 250, 658
BsrI ACTGG 1 cut(s) 537
BssAI RCCGGY 2 cut(s) 250, 658
BssECI CCNNGG 6 cut(s) 214, 225, 240, 397, 566, 726
BssMI GATC 4 cut(s) 269, 408, 578, 681
BssSI CACGAG 2 cut(s) 50, 481
BssT1I CCWWGG 1 cut(s) 240
Bst2BI CACGAG 2 cut(s) 50, 481
Bst4CI ACNGT 2 cut(s) 107, 727
BstC8I GCNNGC 3 cut(s) 290, 573, 660
BstDSI CCRYGG 1 cut(s) 726
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 4 cut(s) 272, 411, 581, 684
BstMBI GATC 4 cut(s) 269, 408, 578, 681
BstMCI CGRYCG 1 cut(s) 698
BstMWI GCNNNNNNNGC 6 cut(s) 128, 137, 146, 377, 547, 706
BstPAI GACNNNNGTC 1 cut(s) 540
BstSCI CCNGG 3 cut(s) 420, 590, 704
BstSLI GKGCMC 2 cut(s) 213, 290
BstV1I GCAGC 2 cut(s) 136, 329
BstV2I GAAGAC 3 cut(s) 286, 366, 536
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 5 cut(s) 140, 288, 317, 402, 571
BtgI CCRYGG 1 cut(s) 726
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 290, 573, 660
Cfr10I RCCGGY 2 cut(s) 250, 658
Cfr13I GGNCC 2 cut(s) 286, 287
CseI GACGC 3 cut(s) 360, 530, 743
Csp6I GTAC 1 cut(s) 640
CviAII CATG 2 cut(s) 65, 496
CviQI GTAC 1 cut(s) 640
DpnI GATC 4 cut(s) 271, 410, 580, 683
DpnII GATC 4 cut(s) 269, 408, 578, 681
DraIII CACNNNGTG 2 cut(s) 52, 483
EaeI YGGCCR 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 290
Eco32I GATATC 2 cut(s) 427, 597
Eco88I CYCGRG 2 cut(s) 381, 551
EcoO109I RGGNCCY 1 cut(s) 286
EcoRV GATATC 2 cut(s) 427, 597
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 68, 499
FaiI YATR 7 cut(s) 66, 154, 248, 440, 497, 610, 672
FatI CATG 2 cut(s) 64, 495
FauI CCCGC 2 cut(s) 297, 460
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 7 cut(s) 120, 123, 150, 343, 403, 465, 635
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 7 cut(s) 120, 123, 150, 343, 403, 465, 635
GluI GCNGC 7 cut(s) 120, 123, 150, 343, 403, 465, 635
HaeIII GGCC 5 cut(s) 140, 288, 317, 402, 571
HapII CCGG 8 cut(s) 14, 251, 324, 390, 422, 592, 659, 705
HgaI GACGC 3 cut(s) 360, 530, 743
Hin1II CATG 2 cut(s) 68, 499
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 9 cut(s) 22, 42, 110, 199, 386, 393, 473, 556, 562
HpaI GTTAAC 1 cut(s) 355
HpaII CCGG 8 cut(s) 14, 251, 324, 390, 422, 592, 659, 705
HphI GGTGA 6 cut(s) 119, 179, 421, 591, 676, 676
Hpy166II GTNNAC 4 cut(s) 211, 355, 524, 754
Hpy188I TCNGA 5 cut(s) 88, 226, 398, 561, 567
Hpy188III TCNNGA 7 cut(s) 14, 26, 276, 324, 383, 390, 553
Hpy8I GTNNAC 4 cut(s) 211, 355, 524, 754
HpyCH4III ACNGT 2 cut(s) 107, 727
HpyCH4IV ACGT 2 cut(s) 163, 750
HpyCH4V TGCA 4 cut(s) 55, 152, 211, 486
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 137, 146, 377, 547, 706
HpySE526I ACGT 2 cut(s) 163, 750
Hsp92II CATG 2 cut(s) 68, 499
Kpn2I TCCGGA 3 cut(s) 13, 323, 389
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 4 cut(s) 269, 408, 578, 681
LmnI GCTCC 2 cut(s) 227, 368
Lsp1109I GCAGC 2 cut(s) 136, 329
MaeII ACGT 2 cut(s) 163, 750
MalI GATC 4 cut(s) 271, 410, 580, 683
MbiI CCGCTC 1 cut(s) 405
MboI GATC 4 cut(s) 269, 408, 578, 681
MboII GAAGA 5 cut(s) 264, 291, 366, 536, 731
MfeI CAATTG 1 cut(s) 757
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 213, 290
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 2 cut(s) 77, 757
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 317
MreI CGCCGGCG 1 cut(s) 658
MroI TCCGGA 3 cut(s) 13, 323, 389
MroNI GCCGGC 1 cut(s) 658
MscI TGGCCA 1 cut(s) 317
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 2 cut(s) 69, 500
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 8 cut(s) 14, 251, 324, 390, 422, 592, 659, 705
MspR9I CCNGG 3 cut(s) 422, 592, 706
MunI CAATTG 1 cut(s) 757
MwoI GCNNNNNNNGC 6 cut(s) 128, 137, 146, 377, 547, 706
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 3 cut(s) 422, 592, 706
NdeII GATC 4 cut(s) 269, 408, 578, 681
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 2 cut(s) 68, 499
NlaIV GGNNCC 2 cut(s) 287, 288
NmeAIII GCCGAG 2 cut(s) 440, 610
PcsI WCGNNNNNNNCGW 3 cut(s) 111, 199, 747
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 8 cut(s) 22, 42, 199, 386, 393, 473, 556, 562
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 7 cut(s) 121, 124, 151, 344, 404, 466, 636
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 287, 288
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 286, 287
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 2 cut(s) 69, 500
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 7 cut(s) 120, 123, 150, 343, 403, 465, 635
Sau3AI GATC 4 cut(s) 269, 408, 578, 681
Sau96I GGNCC 2 cut(s) 286, 287
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 422, 592, 706
SduI GDGCHC 2 cut(s) 213, 290
SgrAI CRCCGGYG 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 69, 500
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 2 cut(s) 77, 757
StyD4I CCNGG 3 cut(s) 420, 590, 704
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 107, 727
TaiI ACGT 2 cut(s) 166, 753
TaqI TCGA 9 cut(s) 135, 257, 407, 417, 443, 577, 587, 613, 714
TasI AATT 2 cut(s) 77, 757
TauI GCSGC 5 cut(s) 122, 125, 405, 467, 637
TfiI GAWTC 8 cut(s) 22, 42, 199, 386, 393, 473, 556, 562
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 2 cut(s) 149, 342
TspDTI ATGAA 3 cut(s) 81, 159, 512
TspGWI ACGGA 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 164
VneI GTGCAC 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.