Rroxscaffold_1G00024670

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000414
Physical Location & Seq
Forward (+)
30679427 .. 30679960
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024670.1

Sequence Viewer

Length: 330 bp
ATGGAAGATGAGAATTTGACTATAGTTGAGCGATATAGAACAACTTGCCCTATATTAATTGATATTGCATCTCAAGCATCTGGAGATGAAAAAGCCTTTGAATTGGTAATGAAAGTCGCACATGAGTTAAGAAAACAAGTTGAAGACATCTTCTTAGACAACTCAGCAACGAGTCATGATGAACTGCCTAATTCTTCACAAGGTGGGGGTGAGAGGATGATATGCTCTCTTCTCGACTCCCTTGCCGGAGGTTTCTCGACGGCGACTTTTATCAAGGAGTGGCCGTCTTGTGCTTTTGACCGAGAGGAGGGTCCTTTCACCTTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

109

Amino Acids

12.12

Weight (kDa)

4.39

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 1 cut(s) 13
AdeI CACNNNGTG 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 101, 143
AoxI GGCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 13
AseI ATTAAT 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 221, 310
AvaII GGWCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 150
BceAI ACGGC 2 cut(s) 268, 276
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BfaI CTAG 1 cut(s) 328
BfmI CTRYAG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 312
BmsI GCATC 2 cut(s) 77, 86
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 320
BshFI GGCC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 1 cut(s) 283
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 154, 163
BstF5I GGATG 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 222
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 311
CviAII CATG 2 cut(s) 122, 176
CviJI RGCY 2 cut(s) 95, 283
CviKI_1 RGCY 2 cut(s) 95, 283
DdeI CTNAG 2 cut(s) 154, 163
DraIII CACNNNGTG 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 311
FaeI CATG 2 cut(s) 125, 179
FaiI YATR 6 cut(s) 23, 36, 53, 123, 177, 223
FatI CATG 2 cut(s) 121, 175
FokI GGATG 1 cut(s) 229
FspBI CTAG 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 246
Hin1II CATG 2 cut(s) 125, 179
HinfI GANTC 2 cut(s) 172, 236
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 221, 310
Hpy188III TCNNGA 4 cut(s) 81, 176, 233, 256
Hpy99I CGWCG 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 154, 163
Hsp92II CATG 2 cut(s) 125, 179
LpnPI CCDG 2 cut(s) 66, 259
LweI GCATC 2 cut(s) 77, 86
MaeI CTAG 1 cut(s) 328
MboII GAAGA 5 cut(s) 17, 142, 155, 186, 221
MluCI AATT 4 cut(s) 13, 57, 101, 190
MlyI GAGTC 2 cut(s) 181, 230
MnlI CCTC 4 cut(s) 207, 242, 298, 301
MseI TTAA 2 cut(s) 56, 128
MspI CCGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 125, 179
NlaIV GGNNCC 1 cut(s) 312
PagI TCATGA 1 cut(s) 175
PleI GAGTC 2 cut(s) 180, 230
PpsI GAGTC 2 cut(s) 180, 230
PpuMI RGGWCCY 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
SaqAI TTAA 2 cut(s) 56, 128
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 181, 230
SetI ASST 3 cut(s) 205, 253, 323
SfaNI GCATC 2 cut(s) 77, 86
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 4 cut(s) 13, 57, 101, 190
SspMI CTAG 1 cut(s) 328
TaqI TCGA 2 cut(s) 234, 257
TaqII GACCGA 1 cut(s) 315
TasI AATT 4 cut(s) 13, 57, 101, 190
Tru1I TTAA 2 cut(s) 56, 128
Tru9I TTAA 2 cut(s) 56, 128
TspDTI ATGAA 3 cut(s) 102, 125, 195
VpaK11BI GGWCC 1 cut(s) 311
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.