FvH4_5g15722

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000414
Physical Location & Seq
Reverse (-)
8899261 .. 8899908
648 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15722.t1

Sequence Viewer

Length: 558 bp
ATGGATTATGGTATATTTGGTGATGTGGTAAGTTTTGATACAACTTACAAACTTAATGAAGCAAATCGACCATTTGCGGTGTTTGTTGGATTAAATCACCATAGACAGACGGTTATTTTTGGAGCTGCCTTAATGTACGACGAGACCGCAGCATCCATTATATGGTTATTTGAAACCTTTTTAAAGGCAATGTGCGGGAAGCCTTCACAAACCTTTTTCACGGATCAAGATGCAGCGATAGCCAAGGCTGTATTACATGTGATGCCAGGTACTTACCATCGACTTTGTATATGGCATTTAATGCAAAATGCTGTAAAAAAAGTAGGCTTCTTATTCCGAGACCACGACGAAGAGGATGAAAGTAATGTGTTCAACAAATTTCTTTATCAAATTGAGGAAGAGGATGAGTTCCTAAGTGCTTGGGAGTCTATGCTTGATGAGTACGAAGCACATGATGATACTTGGTTGGCTGCGACATTTGAAATAAGAAAAAAAATGGGTGCATGCATATGTGAAGTGGACATGGTCAGCAGGAATGCAAACTACACAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

186

Amino Acids

21.38

Weight (kDa)

4.73

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 9 - 103 2.4e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 3 cut(s) 77, 147, 195
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 377
AfaI GTAC 3 cut(s) 137, 271, 443
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 3 cut(s) 173, 373, 482
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 137, 333
AlwI GGATC 1 cut(s) 231
ApeKI GCWGC 4 cut(s) 125, 149, 233, 470
ApoI RAATTY 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 32, 89
BbvI GCAGC 4 cut(s) 112, 161, 245, 457
BccI CCATC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 137, 333
BisI GCNGC 4 cut(s) 126, 150, 234, 471
BlsI GCNGC 4 cut(s) 127, 151, 235, 472
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 3 cut(s) 161, 220, 252
BsaI GGTCTC 2 cut(s) 137, 333
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 3 cut(s) 152, 361, 409
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 543
BseXI GCAGC 4 cut(s) 112, 161, 245, 457
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 137, 333
BsmI GAATGC 1 cut(s) 541
Bso31I GGTCTC 2 cut(s) 137, 333
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 3 cut(s) 77, 147, 195
BspCNI CTCAG 1 cut(s) 544
BspPI GGATC 1 cut(s) 231
BspTNI GGTCTC 2 cut(s) 137, 333
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 345, 393
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 2 cut(s) 413, 552
BstF5I GGATG 3 cut(s) 152, 361, 409
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 137, 333
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 239, 301
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 2 cut(s) 260, 507
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 4 cut(s) 112, 161, 245, 457
BtsCI GGATG 3 cut(s) 152, 361, 409
Cac8I GCNNGC 1 cut(s) 505
Csp6I GTAC 3 cut(s) 136, 270, 442
CviAII CATG 4 cut(s) 257, 452, 504, 523
CviJI RGCY 6 cut(s) 125, 202, 242, 248, 327, 470
CviKI_1 RGCY 6 cut(s) 125, 202, 242, 248, 327, 470
CviQI GTAC 3 cut(s) 136, 270, 442
DdeI CTNAG 2 cut(s) 413, 552
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 345, 393
EarI CTCTTC 2 cut(s) 345, 393
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 2 cut(s) 137, 333
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 4 cut(s) 260, 455, 507, 526
FatI CATG 4 cut(s) 256, 451, 503, 522
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 509
Fnu4HI GCNGC 4 cut(s) 126, 150, 234, 471
FokI GGATG 3 cut(s) 139, 368, 416
Fsp4HI GCNGC 4 cut(s) 126, 150, 234, 471
GluI GCNGC 4 cut(s) 126, 150, 234, 471
Hin1II CATG 4 cut(s) 260, 455, 507, 526
HinfI GANTC 1 cut(s) 425
HphI GGTGA 2 cut(s) 32, 89
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 2 cut(s) 143, 350
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 5 cut(s) 233, 304, 503, 507, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 301
HpyF3I CTNAG 2 cut(s) 413, 552
Hsp92II CATG 4 cut(s) 260, 455, 507, 526
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 252, 279, 517
Lsp1109I GCAGC 4 cut(s) 112, 161, 245, 457
LweI GCATC 3 cut(s) 161, 220, 252
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 362, 410
MluCI AATT 2 cut(s) 377, 390
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 3 cut(s) 346, 388, 394
Mph1103I ATGCAT 1 cut(s) 509
MseI TTAA 5 cut(s) 54, 92, 131, 182, 299
MslI CAYNNNNRTG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 239, 301
NdeI CATATG 1 cut(s) 509
NdeII GATC 1 cut(s) 223
NlaIII CATG 4 cut(s) 260, 455, 507, 526
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 2 cut(s) 260, 507
PaeI GCATGC 1 cut(s) 507
PciI ACATGT 1 cut(s) 256
PctI GAATGC 1 cut(s) 541
PflFI GACNNNGTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 4 cut(s) 127, 151, 235, 472
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PscI ACATGT 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 3 cut(s) 137, 271, 443
RsaNI GTAC 3 cut(s) 136, 270, 442
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 5 cut(s) 54, 92, 131, 182, 299
SatI GCNGC 4 cut(s) 126, 150, 234, 471
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 127, 179, 215, 271
SfaNI GCATC 3 cut(s) 161, 220, 252
SmiMI CAYNNNNRTG 1 cut(s) 508
SphI GCATGC 1 cut(s) 507
Sse9I AATT 2 cut(s) 377, 390
SsiI CCGC 3 cut(s) 77, 147, 195
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 67, 280
TasI AATT 2 cut(s) 377, 390
Tru1I TTAA 5 cut(s) 54, 92, 131, 182, 299
Tru9I TTAA 5 cut(s) 54, 92, 131, 182, 299
TseI GCWGC 4 cut(s) 125, 149, 233, 470
TspDTI ATGAA 2 cut(s) 72, 372
TspGWI ACGGA 1 cut(s) 236
Tth111I GACNNNGTC 1 cut(s) 524
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 1 cut(s) 377
XceI RCATGY 2 cut(s) 260, 507
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.