Rmu_sc0003044.1_g000041

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003044.1
Physical Location & Seq
Forward (+)
152387 .. 152746
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003044.1_g000041.1.cds

Sequence Viewer

Length: 360 bp
atgtatgatgaaacagccgattcatttatatggttgtttgagacatttttgagggcaatgtctggaaaggctccaaagacaatatttacagatcaagatgatacaatggcaaaggctcttcgacatgttatgcctgatacatatcataggctttgcaaatggcatatgatgcaaaatgccatcaagcatggacatagttttttgacaaaagaaggtgggatcacaagtgttttgtcaaggttcatggaaaatattgaggaggaagatgagtttatatctgcttgggatgctatgcttgataaatatggtgctcgtgacaatacttggttaagtagcatatatgatttaagagaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

14.01

Weight (kDa)

5.27

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 124
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 227
BauI CACGAG 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 2 cut(s) 159, 277
BsaBI GATNNNNATC 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 141
BseMI GCAATG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 91, 219
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 63
BssMI GATC 2 cut(s) 91, 219
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 2 cut(s) 94, 222
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 91, 219
BstMWI GCNNNNNNNGC 2 cut(s) 169, 287
BstNSI RCATGY 1 cut(s) 128
BtsCI GGATG 1 cut(s) 292
CviAII CATG 3 cut(s) 125, 188, 244
CviJI RGCY 4 cut(s) 17, 71, 116, 151
CviKI_1 RGCY 4 cut(s) 17, 71, 116, 151
DpnI GATC 2 cut(s) 93, 221
DpnII GATC 2 cut(s) 91, 219
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
FaeI CATG 3 cut(s) 128, 191, 247
FatI CATG 3 cut(s) 124, 187, 243
FauNDI CATATG 1 cut(s) 165
FokI GGATG 1 cut(s) 299
Hin1II CATG 3 cut(s) 128, 191, 247
HinfI GANTC 1 cut(s) 20
Hpy188III TCNNGA 3 cut(s) 63, 95, 314
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 156, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 287
Hsp92II CATG 3 cut(s) 128, 191, 247
Kzo9I GATC 2 cut(s) 91, 219
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 48, 147
LweI GCATC 2 cut(s) 159, 277
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 93, 221
MboI GATC 2 cut(s) 91, 219
MboII GAAGA 2 cut(s) 110, 275
MhlI GDGCHC 1 cut(s) 313
MnlI CCTC 3 cut(s) 45, 250, 253
MseI TTAA 2 cut(s) 329, 347
MslI CAYNNNNRTG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 169, 287
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 91, 219
NlaIII CATG 3 cut(s) 128, 191, 247
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 128
PciI ACATGT 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 20
PscI ACATGT 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 329, 347
Sau3AI GATC 2 cut(s) 91, 219
SduI GDGCHC 1 cut(s) 313
SetI ASST 2 cut(s) 217, 242
SfaNI GCATC 2 cut(s) 159, 277
SmiMI CAYNNNNRTG 1 cut(s) 28
SspI AATATT 2 cut(s) 84, 253
TaqI TCGA 1 cut(s) 121
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 329, 347
Tru9I TTAA 2 cut(s) 329, 347
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 12, 24, 232
XceI RCATGY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.