Rmu_sc0003561.1_g000002

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003561.1
OG0000414
Physical Location & Seq
Reverse (-)
5954 .. 7187
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003561.1_g000002.1.cds

Sequence Viewer

Length: 744 bp
atggaagtgcataatcatgctcttgtgaaccaagagtgtgctcatatgctgccttctcaaccaaatgtctccacccctcaaggcactgaattggatttagtatatgactctaggattcgaacgaaggaatgctatgagctgatgggtaggcaagctggtgggagagactctctcggatatataaaacaagatataaaagaaccatcttcgatccagaaggcaaaggcaattagtatttggagaagctggaagggcagaactggggttcacaaggtcttatcaaagttcatagagtgctatgatgaagaagatgagtttctagctgcttgggatgcgatgctcaccgagtataatgtgcatgaagatgtttggttcaaaagcatttttgaagtaaggaagaaatgggcttatgtatatgttagagggcaatggtgtacaggattgcagacaacccagaatagtgaaagtatcaattctgatttaaaagattatctccaatcagaccatgatttggtgcaatttttcaagcattttgagggagttttaaatgataagcattacaaagagttagaagcagagtatgatttgtgtcaaaagattatatttgaggaatttcaaaatgagtttatgagcgtttttgatttttatataaagaatattgtggataacggagaagacattgtgtatacgattggtgatctggacacttccaaggatttttggtgttataaggaagaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

247

Amino Acids

29.14

Weight (kDa)

4.84

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 511
AccI GTMKAC 1 cut(s) 686
AclWI GGATC 1 cut(s) 205
AcsI RAATTY 1 cut(s) 611
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 4 cut(s) 376, 389, 526, 617
AluBI AGCT 4 cut(s) 139, 155, 246, 323
AluI AGCT 4 cut(s) 139, 155, 246, 323
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 73, 159
AlwI GGATC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 49, 323
ApoI RAATTY 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 334, 707
AsuII TTCGAA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 36, 310
BccI CCATC 2 cut(s) 136, 211
BcoDI GTCTC 2 cut(s) 73, 159
BfaI CTAG 2 cut(s) 111, 320
BisI GCNGC 2 cut(s) 50, 324
BlsI GCNGC 2 cut(s) 51, 325
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 322, 327
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 681
BplI GAGNNNNNCTC 4 cut(s) 154, 186, 156, 188
Bpu14I TTCGAA 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 711
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 36, 310
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 2 cut(s) 73, 159
BsmI GAATGC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 434
Bsp143I GATC 2 cut(s) 210, 697
BspPI GGATC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 434
BsrGI TGTACA 1 cut(s) 434
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 2 cut(s) 210, 697
BssNAI GTATAC 1 cut(s) 687
BssT1I CCWWGG 1 cut(s) 711
Bst1107I GTATAC 1 cut(s) 687
Bst6I CTCTTC 1 cut(s) 732
BstAUI TGTACA 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 2 cut(s) 213, 700
BstMAI GTCTC 2 cut(s) 73, 159
BstMBI GATC 2 cut(s) 210, 697
BstMWI GCNNNNNNNGC 2 cut(s) 252, 332
BstV1I GCAGC 2 cut(s) 36, 310
BstV2I GAAGAC 1 cut(s) 681
BstZ17I GTATAC 1 cut(s) 687
BtgZI GCGATG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 435
CviAII CATG 3 cut(s) 17, 359, 506
CviJI RGCY 5 cut(s) 139, 155, 246, 323, 407
CviKI_1 RGCY 5 cut(s) 139, 155, 246, 323, 407
CviQI GTAC 1 cut(s) 435
DpnI GATC 2 cut(s) 212, 699
DpnII GATC 2 cut(s) 210, 697
DraI TTTAAA 2 cut(s) 483, 546
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 711
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 3 cut(s) 20, 362, 509
FatI CATG 3 cut(s) 16, 358, 505
FauNDI CATATG 1 cut(s) 45
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 2 cut(s) 50, 324
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 50, 324
FspBI CTAG 2 cut(s) 111, 320
GluI GCNGC 2 cut(s) 50, 324
Hin1II CATG 3 cut(s) 20, 362, 509
HinfI GANTC 3 cut(s) 107, 115, 167
HphI GGTGA 2 cut(s) 334, 707
Hpy166II GTNNAC 4 cut(s) 28, 268, 435, 687
Hpy188I TCNGA 3 cut(s) 176, 478, 502
Hpy188III TCNNGA 2 cut(s) 214, 701
Hpy8I GTNNAC 4 cut(s) 28, 268, 435, 687
HpyAV CCTTC 4 cut(s) 63, 118, 211, 244
HpyCH4V TGCA 4 cut(s) 10, 358, 445, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 332
Hsp92II CATG 3 cut(s) 20, 362, 509
Kzo9I GATC 2 cut(s) 210, 697
LpnPI CCDG 7 cut(s) 141, 227, 232, 246, 423, 467, 686
Lsp1109I GCAGC 2 cut(s) 36, 310
LweI GCATC 2 cut(s) 322, 327
MaeI CTAG 2 cut(s) 111, 320
MalI GATC 2 cut(s) 212, 699
MboI GATC 2 cut(s) 210, 697
MboII GAAGA 6 cut(s) 198, 317, 320, 374, 409, 686
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 5 cut(s) 89, 228, 472, 518, 611
MlyI GAGTC 2 cut(s) 101, 161
MnlI CCTC 4 cut(s) 87, 416, 529, 601
MseI TTAA 2 cut(s) 482, 545
MslI CAYNNNNRTG 2 cut(s) 15, 363
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 252, 332
NdeI CATATG 1 cut(s) 45
NdeII GATC 2 cut(s) 210, 697
NlaIII CATG 3 cut(s) 20, 362, 509
NspV TTCGAA 1 cut(s) 118
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 2 cut(s) 51, 325
PleI GAGTC 2 cut(s) 101, 161
PpsI GAGTC 2 cut(s) 101, 161
PsiI TTATAA 1 cut(s) 729
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 15, 363
SaqAI TTAA 2 cut(s) 482, 545
SatI GCNGC 2 cut(s) 50, 324
Sau3AI GATC 2 cut(s) 210, 697
SchI GAGTC 2 cut(s) 101, 161
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 141, 157, 248, 276, 325
SfaNI GCATC 2 cut(s) 322, 327
SfuI TTCGAA 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 15, 363
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 5 cut(s) 89, 228, 472, 518, 611
SspI AATATT 1 cut(s) 658
SspMI CTAG 2 cut(s) 111, 320
StyI CCWWGG 1 cut(s) 711
TaqI TCGA 2 cut(s) 118, 209
TasI AATT 5 cut(s) 89, 228, 472, 518, 611
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 482, 545
Tru9I TTAA 2 cut(s) 482, 545
TscAI CASTG 1 cut(s) 91
TseI GCWGC 2 cut(s) 49, 323
TspDTI ATGAA 3 cut(s) 277, 318, 375
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 511
XapI RAATTY 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 686
XspI CTAG 2 cut(s) 111, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.