RLG00000033727

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
31447183 .. 31447897
715 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033727

Sequence Viewer

Length: 558 bp
ATGTATGGCCAAGACATCCAAGTAGATACCAACCTACAACAAACATCTTGGTACAAGTTTCTAAGTTCCATATCGACCAAGATTTCATCTCGGGCAGCTGAGAGAGAGGAGACATTTAAGTTTGCTGTTCAGAAATTGAGAGAACTAAGCAAAGCTATTGAAGACATGTTATGTTCAGAAATGGATACATTACATCTTGGTAAGGATGACCAGATTACACCTCCCAGCTATGATGTGATTGAGGGTATTAATTTGGCCAAAAGTAACTCGGATAAGGCAAAAGTTGTTCAAGCCAAGGGATTCAAGAAAAGGGAGAGTGCTCGAGGAAGAAAAAAAAGAATTATAGGTGATTTTGAAAAAAGTTTAGCCAAGAATCGAAAAGGGAGAACTCTTGATACAGAAAAGTCATCTAGTTTTGATTCAACCAAGTCTGGAAATTGTGGTGCTCCATTTCCAATGTTATGGATGCCATTTCAAGAATCTCAAAGTTTTAGTTACCAAGCATTACTTAACTCTCAAGATTTTCCAGATGATGGGACACAAGATGGTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

20.87

Weight (kDa)

6.63

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AcoI YGGCCR 2 cut(s) 7, 255
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 6 cut(s) 161, 290, 304, 356, 423, 476
AluBI AGCT 3 cut(s) 98, 155, 228
AluI AGCT 3 cut(s) 98, 155, 228
Alw21I GWGCWC 2 cut(s) 322, 448
Alw26I GTCTC 1 cut(s) 104
Ama87I CYCGRG 2 cut(s) 90, 321
AoxI GGCC 2 cut(s) 7, 255
ApeKI GCWGC 1 cut(s) 95
AseI ATTAAT 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 2 cut(s) 90, 321
BalI TGGCCA 2 cut(s) 9, 257
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 322, 448
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 527, 539
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 90, 321
BmsI GCATC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 533
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 3 cut(s) 15, 211, 471
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 224
BshFI GGCC 2 cut(s) 9, 257
BsiHKAI GWGCWC 2 cut(s) 322, 448
BsiHKCI CYCGRG 2 cut(s) 90, 321
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 2 cut(s) 9, 257
BsoBI CYCGRG 2 cut(s) 90, 321
Bsp1286I GDGCHC 2 cut(s) 322, 448
BspANI GGCC 2 cut(s) 9, 257
BspCNI CTCAG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 62, 99, 146
BstF5I GGATG 3 cut(s) 15, 211, 471
BstMAI GTCTC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 462
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 9, 257
BtsCI GGATG 3 cut(s) 15, 211, 471
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 166
CviJI RGCY 7 cut(s) 9, 98, 155, 228, 257, 293, 368
CviKI_1 RGCY 7 cut(s) 9, 98, 155, 228, 257, 293, 368
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 3 cut(s) 62, 99, 146
EaeI YGGCCR 2 cut(s) 7, 255
Eco130I CCWWGG 1 cut(s) 294
Eco88I CYCGRG 2 cut(s) 90, 321
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 169
FaiI YATR 7 cut(s) 6, 71, 167, 172, 231, 344, 463
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 1 cut(s) 550
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 3 cut(s) 2, 218, 478
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 411
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 9, 257
Hin1II CATG 1 cut(s) 169
HinfI GANTC 4 cut(s) 300, 373, 419, 479
HphI GGTGA 1 cut(s) 359
Hpy188I TCNGA 3 cut(s) 132, 178, 271
Hpy188III TCNNGA 6 cut(s) 304, 392, 432, 476, 518, 527
HpyF3I CTNAG 3 cut(s) 62, 99, 146
Hsp92II CATG 1 cut(s) 169
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 4 cut(s) 224, 238, 417, 540
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 263, 494
MboII GAAGA 2 cut(s) 173, 339
MhlI GDGCHC 2 cut(s) 322, 448
MlsI TGGCCA 2 cut(s) 9, 257
MluCI AATT 4 cut(s) 134, 250, 339, 436
MluNI TGGCCA 2 cut(s) 9, 257
MnlI CCTC 4 cut(s) 100, 231, 235, 317
Mox20I TGGCCA 2 cut(s) 9, 257
MscI TGGCCA 2 cut(s) 9, 257
MseI TTAA 3 cut(s) 117, 249, 510
Msp20I TGGCCA 2 cut(s) 9, 257
MspA1I CMGCKG 1 cut(s) 98
NlaIII CATG 1 cut(s) 169
NspI RCATGY 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 321
PciI ACATGT 1 cut(s) 165
PfeI GAWTC 4 cut(s) 300, 373, 419, 479
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 321
PsrI GAACNNNNNNTAC 2 cut(s) 379, 411
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 3 cut(s) 117, 249, 510
SatI GCNGC 1 cut(s) 96
SduI GDGCHC 2 cut(s) 322, 448
SetI ASST 6 cut(s) 36, 100, 157, 223, 230, 349
SfaNI GCATC 1 cut(s) 456
Sfr274I CTCGAG 1 cut(s) 321
SlaI CTCGAG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 321, 516
SmoI CTYRAG 2 cut(s) 321, 516
Sse9I AATT 4 cut(s) 134, 250, 339, 436
SspMI CTAG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 294
TaqI TCGA 3 cut(s) 74, 322, 376
TasI AATT 4 cut(s) 134, 250, 339, 436
TfiI GAWTC 4 cut(s) 300, 373, 419, 479
Tru1I TTAA 3 cut(s) 117, 249, 510
Tru9I TTAA 3 cut(s) 117, 249, 510
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 533
VspI ATTAAT 1 cut(s) 249
XceI RCATGY 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 321
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.