Rmu_sc0004311.1_g000003

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004311.1
OG0000414
Physical Location & Seq
Reverse (-)
10037 .. 10741
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004311.1_g000003.1.cds

Sequence Viewer

Length: 705 bp
atgattccatctcaacgaaatcttacagatggccaagctattcatattgattttgccgatgactctggacttaaaccaaaggttgcacaccaatttttcagtcaacaagttggtgggaaggaaaatcttggatacactgaaagagatcaaaaaacttacttaagaagtaagcgccaaaaggatatggcctatggagaagcaggcagcctcttaaggtatttacacaatcaatcttgtgagaatccctcatttcaatatgcagtacagttggatagtgaagaacagattacaaatatattttgggcagatacaagaatgattattgcttatgctcattttggcgatgtcattactttcgacaccacgtacagtgctaataaagaatataggccttttggggtattttctgggtttaatcatcacagagagactgtactatttggggctgcactcctttatgatgagacggctgaatcttttaagtggttgttccaaacattcttagaagcacataagcaaaaaaagccaaagactatatttacataccaagatcctgcaatggcaaaggcattggccgaggtacttccagatacgttcaatggattatgtagttggcatataatgcaaaatggaatcaagcatttgggatacctaatgaaggatggctcatttttttcttacagaatttgcaacatgcatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

234

Amino Acids

26.97

Weight (kDa)

6.55

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 2 cut(s) 31, 573
AcsI RAATTY 1 cut(s) 684
AfaI GTAC 4 cut(s) 264, 368, 435, 582
AfiI CCNNNNNNNGG 1 cut(s) 658
AflII CTTAAG 2 cut(s) 160, 211
AgsI TTSAA 2 cut(s) 254, 598
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 422, 458
AlwI GGATC 1 cut(s) 545
AoxI GGCC 4 cut(s) 31, 186, 389, 573
ApeKI GCWGC 2 cut(s) 204, 446
ApoI RAATTY 1 cut(s) 684
AspLEI GCGC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 33
BbvI GCAGC 2 cut(s) 216, 433
BccI CCATC 3 cut(s) 16, 23, 656
BceAI ACGGC 1 cut(s) 483
BciVI GTATCC 2 cut(s) 125, 641
BcoDI GTCTC 2 cut(s) 422, 458
BfoI RGCGCY 1 cut(s) 175
BfrI CTTAAG 2 cut(s) 160, 211
BfuI GTATCC 2 cut(s) 125, 641
BisI GCNGC 2 cut(s) 205, 447
BlsI GCNGC 2 cut(s) 206, 448
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BsaAI YACGTR 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 576
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 1 cut(s) 667
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMI GCAATG 1 cut(s) 564
BseXI GCAGC 2 cut(s) 216, 433
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 4 cut(s) 33, 188, 391, 575
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 2 cut(s) 422, 458
BsmBI CGTCTC 1 cut(s) 458
BsnI GGCC 4 cut(s) 33, 188, 391, 575
Bsp143I GATC 2 cut(s) 145, 550
BspANI GGCC 4 cut(s) 33, 188, 391, 575
BspPI GGATC 1 cut(s) 545
BspTI CTTAAG 2 cut(s) 160, 211
BsrDI GCAATG 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 2 cut(s) 145, 550
Bst4CI ACNGT 3 cut(s) 267, 371, 433
BstAFI CTTAAG 2 cut(s) 160, 211
BstAPI GCANNNNNTGC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 148, 553
BstMAI GTCTC 2 cut(s) 422, 458
BstMBI GATC 2 cut(s) 145, 550
BstMWI GCNNNNNNNGC 2 cut(s) 523, 622
BstNSI RCATGY 2 cut(s) 697, 701
BstV1I GCAGC 2 cut(s) 216, 433
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuI GTATCC 2 cut(s) 125, 641
BsuRI GGCC 4 cut(s) 33, 188, 391, 575
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 667
BtsIMutI CAGTG 2 cut(s) 135, 376
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 174
Csp6I GTAC 4 cut(s) 263, 367, 434, 581
CviAII CATG 2 cut(s) 694, 698
CviQI GTAC 4 cut(s) 263, 367, 434, 581
DdeI CTNAG 1 cut(s) 502
DpnI GATC 2 cut(s) 147, 552
DpnII GATC 2 cut(s) 145, 550
EaeI YGGCCR 2 cut(s) 31, 573
Eco147I AGGCCT 1 cut(s) 391
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 2 cut(s) 697, 701
FatI CATG 2 cut(s) 693, 697
Fnu4HI GCNGC 2 cut(s) 205, 447
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 2 cut(s) 205, 447
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 205, 447
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 4 cut(s) 33, 188, 391, 575
HhaI GCGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 697, 701
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 5 cut(s) 4, 62, 241, 473, 633
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 2 cut(s) 66, 587
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 112, 652
HpyCH4III ACNGT 3 cut(s) 267, 371, 433
HpyCH4IV ACGT 2 cut(s) 365, 593
HpyCH4V TGCA 7 cut(s) 86, 260, 449, 557, 625, 690, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 523, 622
HpyF3I CTNAG 1 cut(s) 502
HpySE526I ACGT 2 cut(s) 365, 593
Hsp92II CATG 2 cut(s) 697, 701
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 145, 550
LpnPI CCDG 5 cut(s) 51, 186, 393, 567, 600
Lsp1109I GCAGC 2 cut(s) 216, 433
MaeII ACGT 2 cut(s) 365, 593
MalI GATC 2 cut(s) 147, 552
MboI GATC 2 cut(s) 145, 550
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 2 cut(s) 92, 684
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 218, 256, 571
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 699
MscI TGGCCA 1 cut(s) 33
MseI TTAA 5 cut(s) 72, 161, 212, 414, 480
Msp20I TGGCCA 1 cut(s) 33
MspCI CTTAAG 2 cut(s) 160, 211
MwoI GCNNNNNNNGC 2 cut(s) 523, 622
NdeII GATC 2 cut(s) 145, 550
NlaIII CATG 2 cut(s) 697, 701
NmeAIII GCCGAG 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 699
NspI RCATGY 2 cut(s) 697, 701
PceI AGGCCT 1 cut(s) 391
PfeI GAWTC 4 cut(s) 4, 241, 473, 633
PkrI GCNGC 2 cut(s) 206, 448
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 366
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 4 cut(s) 264, 368, 435, 582
RsaNI GTAC 4 cut(s) 263, 367, 434, 581
SaqAI TTAA 5 cut(s) 72, 161, 212, 414, 480
SatI GCNGC 2 cut(s) 205, 447
Sau3AI GATC 2 cut(s) 145, 550
SchI GAGTC 1 cut(s) 56
SetI ASST 7 cut(s) 40, 84, 218, 368, 582, 596, 654
SmlI CTYRAG 2 cut(s) 160, 211
SmoI CTYRAG 2 cut(s) 160, 211
Sse9I AATT 2 cut(s) 92, 684
SseBI AGGCCT 1 cut(s) 391
StuI AGGCCT 1 cut(s) 391
TaaI ACNGT 3 cut(s) 267, 371, 433
TaiI ACGT 2 cut(s) 368, 596
TaqI TCGA 1 cut(s) 357
TasI AATT 2 cut(s) 92, 684
TatI WGTACW 2 cut(s) 262, 433
TfiI GAWTC 4 cut(s) 4, 241, 473, 633
Tru1I TTAA 5 cut(s) 72, 161, 212, 414, 480
Tru9I TTAA 5 cut(s) 72, 161, 212, 414, 480
TscAI CASTG 2 cut(s) 142, 376
TseI GCWGC 2 cut(s) 204, 446
TspDTI ATGAA 2 cut(s) 32, 671
TspRI CASTG 2 cut(s) 142, 376
Vha464I CTTAAG 2 cut(s) 160, 211
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 1 cut(s) 684
XceI RCATGY 2 cut(s) 697, 701
Zsp2I ATGCAT 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.