Rmu_sc0003850.1_g000001

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003850.1
OG0000414
Physical Location & Seq
Reverse (-)
8576 .. 9430
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003850.1_g000001.1.cds

Sequence Viewer

Length: 855 bp
atggaaaatattgaggaggaagatgagtttatatctgcttgggatgctatgcttgataaatatggtgcgcgtgacaatacatggttgagtagcatatatgatttaagagaaaagtggggctttccgtatgttaagcgagcatggtcagctggaataagaagcactcaactaagtgagagttttaactctgccttgaaaaaatatttagactctgaccacaatccgttagagttttttacacactatgagaggatggttgctgataaaaggtacaaggagttacaagcaaaatatgatatgtgcttcatgttgcctattctgaaaatgcatgtcaaaatgctaaatgaagcaagaaaagtttacactaaactaatatttgaagagtttcaagatcaatttgaatcgtctcttgaagcttctataacagattgtgttgatgttgatggtggaaagatatatactatgtttagagatggctactctagagaacggcaagtgaagagagatagtgatgatataatctcttgtagttgtagattatttgagatgaaaggggttgtatctaggcacattatcaaggtctttaaagaagtgatgcaaatcaaagaaattcctgagcattatatcttaaaaagatggaccaaaaaagctcgagctgaaagtgttcaggacatgcatgggtgtgaaattcaaccagaccctaagttccaacaagcctcttggttcagatctttatgttccacctacattagaatatcaagcagggcttctgaaaatgaaaaagcatacaaattcgtcatgacaaatgcagagaagttagcaaaagaagttgaagaattgctacgatctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

284

Amino Acids

33.7

Weight (kDa)

6.16

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AcsI RAATTY 3 cut(s) 609, 687, 791
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 7 cut(s) 196, 380, 389, 401, 413, 692, 833
AluBI AGCT 4 cut(s) 149, 416, 650, 656
AluI AGCT 4 cut(s) 149, 416, 650, 656
Alw26I GTCTC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 651
ApoI RAATTY 3 cut(s) 609, 687, 791
Asp700I GAANNNNTTC 2 cut(s) 384, 663
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 639
AvaI CYCGRG 1 cut(s) 651
AvaII GGWCC 1 cut(s) 639
BarI GAAGNNNNNNTAC 1 cut(s) 825
BccI CCATC 4 cut(s) 247, 437, 467, 630
BceAI ACGGC 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 2 cut(s) 483, 564
BglII AGATCT 1 cut(s) 728
Bme18I GGWCC 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 651
BmgT120I GGNCC 1 cut(s) 639
BmsI GCATC 2 cut(s) 34, 585
Bpu10I CCTNAGC 1 cut(s) 615
BsaBI GATNNNNATC 1 cut(s) 599
Bse8I GATNNNNATC 1 cut(s) 599
BseGI GGATG 2 cut(s) 49, 258
BseJI GATNNNNATC 1 cut(s) 599
BseMII CTCAG 1 cut(s) 606
BseRI GAGGAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 651
BsmAI GTCTC 1 cut(s) 411
BsmBI CGTCTC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 651
Bsp143I GATC 3 cut(s) 391, 728, 845
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 798
BssMI GATC 3 cut(s) 391, 728, 845
Bst6I CTCTTC 2 cut(s) 375, 494
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 170, 615, 702
BstF5I GGATG 2 cut(s) 49, 258
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 394, 731, 848
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 3 cut(s) 391, 728, 845
BstMWI GCNNNNNNNGC 2 cut(s) 44, 146
BstNSI RCATGY 2 cut(s) 332, 676
BstUI CGCG 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 728
BstYI RGATCY 1 cut(s) 728
BtsCI GGATG 2 cut(s) 49, 258
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 798
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 639
Csp6I GTAC 1 cut(s) 271
CviAII CATG 7 cut(s) 81, 141, 307, 329, 673, 677, 799
CviJI RGCY 8 cut(s) 120, 149, 416, 477, 650, 656, 716, 767
CviKI_1 RGCY 8 cut(s) 120, 149, 416, 477, 650, 656, 716, 767
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 3 cut(s) 170, 615, 702
DpnI GATC 3 cut(s) 393, 730, 847
DpnII GATC 3 cut(s) 391, 728, 845
DraI TTTAAA 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 375, 494
EarI CTCTTC 2 cut(s) 375, 494
Eco47I GGWCC 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 651
EcoT22I ATGCAT 2 cut(s) 330, 678
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 7 cut(s) 84, 144, 310, 332, 676, 680, 802
FalI AAGNNNNNCTT 4 cut(s) 104, 136, 751, 783
FatI CATG 7 cut(s) 80, 140, 306, 328, 672, 676, 798
FokI GGATG 2 cut(s) 56, 265
FspBI CTAG 2 cut(s) 483, 564
GlaI GCGC 1 cut(s) 69
HhaI GCGC 1 cut(s) 70
Hin1II CATG 7 cut(s) 84, 144, 310, 332, 676, 680, 802
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 2 cut(s) 209, 401
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 5 cut(s) 214, 321, 728, 772, 850
Hpy188III TCNNGA 6 cut(s) 389, 410, 483, 614, 668, 799
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4V TGCA 4 cut(s) 328, 598, 676, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 146
HpyF3I CTNAG 3 cut(s) 170, 615, 702
Hsp92II CATG 7 cut(s) 84, 144, 310, 332, 676, 680, 802
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 3 cut(s) 391, 728, 845
LpnPI CCDG 5 cut(s) 135, 627, 653, 708, 748
LweI GCATC 2 cut(s) 34, 585
MaeI CTAG 2 cut(s) 483, 564
MaeIII GTNAC 2 cut(s) 71, 279
MalI GATC 3 cut(s) 393, 730, 847
MboI GATC 3 cut(s) 391, 728, 845
MboII GAAGA 4 cut(s) 32, 392, 511, 845
MflI RGATCY 1 cut(s) 728
MluCI AATT 5 cut(s) 395, 609, 687, 791, 836
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 4 cut(s) 7, 10, 243, 727
Mph1103I ATGCAT 2 cut(s) 330, 678
MroXI GAANNNNTTC 2 cut(s) 384, 663
MseI TTAA 5 cut(s) 104, 132, 183, 585, 629
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 149
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 44, 146
NdeII GATC 3 cut(s) 391, 728, 845
NlaIII CATG 7 cut(s) 84, 144, 310, 332, 676, 680, 802
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 2 cut(s) 330, 678
NspI RCATGY 2 cut(s) 332, 676
PaeR7I CTCGAG 1 cut(s) 651
PagI TCATGA 1 cut(s) 798
PdmI GAANNNNTTC 2 cut(s) 384, 663
PfeI GAWTC 1 cut(s) 401
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 639
PspXI VCTCGAGB 1 cut(s) 651
PsuI RGATCY 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 5 cut(s) 104, 132, 183, 585, 629
Sau3AI GATC 3 cut(s) 391, 728, 845
Sau96I GGNCC 1 cut(s) 639
SchI GAGTC 1 cut(s) 203
SetI ASST 7 cut(s) 151, 272, 418, 582, 652, 658, 746
SfaNI GCATC 2 cut(s) 34, 585
Sfr274I CTCGAG 1 cut(s) 651
SinI GGWCC 1 cut(s) 639
SlaI CTCGAG 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 5 cut(s) 395, 609, 687, 791, 836
SspI AATATT 3 cut(s) 10, 203, 375
SspMI CTAG 2 cut(s) 483, 564
TaqI TCGA 1 cut(s) 652
TasI AATT 5 cut(s) 395, 609, 687, 791, 836
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 5 cut(s) 104, 132, 183, 585, 629
Tru9I TTAA 5 cut(s) 104, 132, 183, 585, 629
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 295, 360, 563, 792
TspGWI ACGGA 2 cut(s) 114, 213
VpaK11BI GGWCC 1 cut(s) 639
XapI RAATTY 3 cut(s) 609, 687, 791
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 2 cut(s) 332, 676
XhoI CTCGAG 1 cut(s) 651
XmnI GAANNNNTTC 2 cut(s) 384, 663
XspI CTAG 2 cut(s) 483, 564
Zsp2I ATGCAT 2 cut(s) 330, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.