Rmu_sc0011183.1_g000001

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011183.1
OG0000414
Physical Location & Seq
Reverse (-)
3708 .. 4858
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011183.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
atggatgacagtgcaacatgtattttggatgagggcatcaataagtgtattgattggattcctcgaataggtatgcaatttgatacagtagatgctgcatttcagttttggcgtacctatggaggccgacctggttttggggttcgaaaactgtatgcaaataagaaagcatgtcacatgattccatctcaacgaaatcttacagatggccaagctattcatattgattttgccgatgactctggacttaaaccaaaggctgcacaccaatttttcagtcaacaagttggtgggaaggaaaatcttggatacactgaaagagatcaaaaaaattacttaagaagtaagcgccaaaaggatatggcctatggagaagcaggcagcctcttgagagagactgtactatttggggctgcactcctttatgatgagacggttgaatcttttaagtggtggttccaaacattcttagaagcacataagcaaaaaaagccaaagactatatttacagaccaagatcctgcaatggcaaaggcattggccgaggtacttccagatacgttccatggattatgtagttggcatataatgcaaaatggaatcaagcatttgggatacctaatgaaggatggctcattttttcttacagaatttgcagcatgcatgtatgagcatgaggaagagaaagaatttgaagatgcttggaatgctatgctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

239

Amino Acids

27.44

Weight (kDa)

5.76

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 2 cut(s) 208, 540
AcsI RAATTY 2 cut(s) 650, 689
AfaI GTAC 3 cut(s) 115, 402, 549
AfiI CCNNNNNNNGG 3 cut(s) 68, 137, 625
AflII CTTAAG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 2 cut(s) 440, 695
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 389, 425
AlwI GGATC 1 cut(s) 512
AoxI GGCC 4 cut(s) 124, 208, 363, 540
ApeKI GCWGC 5 cut(s) 95, 260, 381, 413, 656
ApoI RAATTY 2 cut(s) 650, 689
AspLEI GCGC 1 cut(s) 351
AsuII TTCGAA 1 cut(s) 145
BalI TGGCCA 1 cut(s) 210
BbvI GCAGC 5 cut(s) 82, 247, 393, 400, 668
BccI CCATC 3 cut(s) 193, 200, 623
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 2 cut(s) 302, 608
BcoDI GTCTC 2 cut(s) 389, 425
BfoI RGCGCY 1 cut(s) 352
BfrI CTTAAG 1 cut(s) 337
BfuI GTATCC 2 cut(s) 302, 608
BisI GCNGC 5 cut(s) 96, 261, 382, 414, 657
BlsI GCNGC 5 cut(s) 97, 262, 383, 415, 658
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 45, 82, 688
Bpu14I TTCGAA 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 409
BsaJI CCNNGG 2 cut(s) 543, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 137, 625
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 543, 565
BseGI GGATG 3 cut(s) 10, 34, 634
BseLI CCNNNNNNNGG 3 cut(s) 68, 137, 625
BseMI GCAATG 1 cut(s) 531
BseXI GCAGC 5 cut(s) 82, 247, 393, 400, 668
BsgI GTGCAG 2 cut(s) 246, 399
BshFI GGCC 4 cut(s) 126, 210, 365, 542
BslI CCNNNNNNNGG 3 cut(s) 68, 137, 625
BsmAI GTCTC 2 cut(s) 389, 425
BsmBI CGTCTC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 4 cut(s) 126, 210, 365, 542
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 2 cut(s) 322, 517
Bsp19I CCATGG 1 cut(s) 565
BspANI GGCC 4 cut(s) 126, 210, 365, 542
BspLI GGNNCC 1 cut(s) 458
BspPI GGATC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 543, 565
BssMI GATC 2 cut(s) 322, 517
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 5 cut(s) 11, 88, 153, 400, 436
Bst6I CTCTTC 1 cut(s) 675
BstAFI CTTAAG 1 cut(s) 337
BstAPI GCANNNNNTGC 1 cut(s) 589
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 379, 661
BstDEI CTNAG 1 cut(s) 469
BstDSI CCRYGG 1 cut(s) 565
BstENI CCTNNNNNAGG 2 cut(s) 66, 623
BstF5I GGATG 3 cut(s) 10, 34, 634
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 2 cut(s) 325, 520
BstMAI GTCTC 2 cut(s) 389, 425
BstMBI GATC 2 cut(s) 322, 517
BstMWI GCNNNNNNNGC 3 cut(s) 490, 589, 707
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 4 cut(s) 21, 174, 663, 667
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 5 cut(s) 82, 247, 393, 400, 668
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuI GTATCC 2 cut(s) 302, 608
BsuRI GGCC 4 cut(s) 126, 210, 365, 542
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 3 cut(s) 10, 34, 634
BtsIMutI CAGTG 2 cut(s) 16, 312
Cac8I GCNNGC 2 cut(s) 379, 661
CfoI GCGC 1 cut(s) 351
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 3 cut(s) 114, 401, 548
CviAII CATG 7 cut(s) 18, 171, 178, 566, 660, 664, 674
CviQI GTAC 3 cut(s) 114, 401, 548
DdeI CTNAG 1 cut(s) 469
DpnI GATC 2 cut(s) 324, 519
DpnII GATC 2 cut(s) 322, 517
EaeI YGGCCR 2 cut(s) 208, 540
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 565
EcoNI CCTNNNNNAGG 2 cut(s) 66, 623
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 7 cut(s) 21, 174, 181, 569, 663, 667, 677
FatI CATG 7 cut(s) 17, 170, 177, 565, 659, 663, 673
Fnu4HI GCNGC 5 cut(s) 96, 261, 382, 414, 657
FokI GGATG 3 cut(s) 17, 41, 641
Fsp4HI GCNGC 5 cut(s) 96, 261, 382, 414, 657
GlaI GCGC 1 cut(s) 350
GluI GCNGC 5 cut(s) 96, 261, 382, 414, 657
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 4 cut(s) 126, 210, 365, 542
HhaI GCGC 1 cut(s) 351
Hin1II CATG 7 cut(s) 21, 174, 181, 569, 663, 667, 677
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 5 cut(s) 58, 181, 239, 440, 600
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 3 cut(s) 243, 388, 554
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 289, 619
HpyCH4III ACNGT 5 cut(s) 11, 88, 153, 400, 436
HpyCH4IV ACGT 1 cut(s) 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 490, 589, 707
HpyF3I CTNAG 1 cut(s) 469
HpySE526I ACGT 1 cut(s) 560
Hsp92II CATG 7 cut(s) 21, 174, 181, 569, 663, 667, 677
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 2 cut(s) 322, 517
LpnPI CCDG 6 cut(s) 117, 144, 228, 363, 534, 567
Lsp1109I GCAGC 5 cut(s) 82, 247, 393, 400, 668
LweI GCATC 3 cut(s) 45, 82, 688
MabI ACCWGGT 1 cut(s) 130
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 324, 519
MboI GATC 2 cut(s) 322, 517
MboII GAAGA 2 cut(s) 692, 707
MflI RGATCY 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 5 cut(s) 77, 269, 331, 650, 689
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 6 cut(s) 25, 72, 116, 395, 538, 670
Mox20I TGGCCA 1 cut(s) 210
Mph1103I ATGCAT 1 cut(s) 665
MscI TGGCCA 1 cut(s) 210
MseI TTAA 3 cut(s) 249, 338, 447
Msp20I TGGCCA 1 cut(s) 210
MspCI CTTAAG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 490, 589, 707
NcoI CCATGG 1 cut(s) 565
NdeII GATC 2 cut(s) 322, 517
NlaIII CATG 7 cut(s) 21, 174, 181, 569, 663, 667, 677
NlaIV GGNNCC 1 cut(s) 458
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 4 cut(s) 21, 174, 663, 667
NspV TTCGAA 1 cut(s) 145
PaeI GCATGC 1 cut(s) 663
PciI ACATGT 1 cut(s) 17
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 4 cut(s) 58, 181, 440, 600
PkrI GCNGC 5 cut(s) 97, 262, 383, 415, 658
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PscI ACATGT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 3 cut(s) 115, 402, 549
RsaNI GTAC 3 cut(s) 114, 401, 548
SaqAI TTAA 3 cut(s) 249, 338, 447
SatI GCNGC 5 cut(s) 96, 261, 382, 414, 657
Sau3AI GATC 2 cut(s) 322, 517
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 132
SetI ASST 7 cut(s) 73, 119, 133, 217, 549, 563, 621
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 3 cut(s) 45, 82, 688
SfuI TTCGAA 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 337, 388
SmoI CTYRAG 2 cut(s) 337, 388
SphI GCATGC 1 cut(s) 663
Sse9I AATT 5 cut(s) 77, 269, 331, 650, 689
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 5 cut(s) 11, 88, 153, 400, 436
TaiI ACGT 1 cut(s) 563
TaqI TCGA 2 cut(s) 64, 145
TasI AATT 5 cut(s) 77, 269, 331, 650, 689
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 4 cut(s) 58, 181, 440, 600
Tru1I TTAA 3 cut(s) 249, 338, 447
Tru9I TTAA 3 cut(s) 249, 338, 447
TscAI CASTG 2 cut(s) 16, 319
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 5 cut(s) 95, 260, 381, 413, 656
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 209, 638
TspRI CASTG 2 cut(s) 16, 319
Vha464I CTTAAG 1 cut(s) 337
XagI CCTNNNNNAGG 2 cut(s) 66, 623
XapI RAATTY 2 cut(s) 650, 689
XceI RCATGY 4 cut(s) 21, 174, 663, 667
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.