Rmu_sc0003044.1_g000042

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003044.1
OG0000414
Physical Location & Seq
Forward (+)
152882 .. 153661
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003044.1_g000042.1.cds

Sequence Viewer

Length: 780 bp
atgattgctaataaaaggtacaaggagttagaagcagaatatgatatgtgcttcaggttgcctattctgaaaatgcatgtgaaaatgctatatgaagcaagaagagtttacactaagctgatatttgaagattttcaggatcaatttgaatcatccctcgaagcttctataaaaaattgcattgatattgatggtggaaagatatatacagttattagagatggttactctagagaacgccaagtgaagagagatagtgatgatatagtctcttgcagttgcagattgtttgagatgaaaggagttgtatgtaggcacattatcaaggtccttagagaagtgatgcaaatcaaagaaattcctgagcattatatcttaaaaagatggaccaaaaaagctagagctgaaagtgttcaagacatgcatgggcgtgaaattcaaccagaccctaagttgcagcaagcctcttggtacagatccttatgttccacctacattaggatattaagcagggcttctaaaaatgaaaaggcctacaaattagtaatgatacatgcagagaaattagcaaaagaaattgaagacttgctacggtctgaaatgaatgctaatggggatgagaatgaacatacaactcaatctactgctattgaacaactcaatggtaatgtggtgaatgcaaagggactgaagaaaaaggaatcttctagaggaagaaaacggcgaatcaagagtcaattggagataagcatggaaaaaaataaaagacaaaaaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

259

Amino Acids

30.52

Weight (kDa)

9.45

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 147, 471
AcsI RAATTY 2 cut(s) 357, 435
AcuI CTGAAG 2 cut(s) 37, 710
AfaI GTAC 2 cut(s) 20, 473
AfiI CCNNNNNNNGG 1 cut(s) 498
AgsI TTSAA 6 cut(s) 128, 149, 416, 440, 581, 653
AluBI AGCT 4 cut(s) 118, 164, 398, 404
AluI AGCT 4 cut(s) 118, 164, 398, 404
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 147, 471
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 2 cut(s) 357, 435
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
Asp700I GAANNNNTTC 2 cut(s) 132, 411
AspS9I GGNCC 2 cut(s) 328, 387
AsuHPI GGTGA 1 cut(s) 685
AvaII GGWCC 2 cut(s) 328, 387
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 469
BccI CCATC 3 cut(s) 185, 215, 378
BceAI ACGGC 1 cut(s) 737
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 4 cut(s) 231, 399, 708, 778
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
Bme18I GGWCC 2 cut(s) 328, 387
BmgT120I GGNCC 2 cut(s) 328, 387
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 347
BseGI GGATG 2 cut(s) 152, 622
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 1 cut(s) 533
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 699
BsmI GAATGC 2 cut(s) 610, 682
BsnI GGCC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 139, 476
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 355
BspPI GGATC 2 cut(s) 147, 471
BssMI GATC 2 cut(s) 139, 476
Bst4CI ACNGT 2 cut(s) 211, 594
Bst6I CTCTTC 2 cut(s) 97, 242
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 4 cut(s) 114, 332, 363, 450
BstENI CCTNNNNNAGG 1 cut(s) 496
BstF5I GGATG 2 cut(s) 152, 622
BstKTI GATC 2 cut(s) 142, 479
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 139, 476
BstNSI RCATGY 3 cut(s) 80, 424, 557
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 533
BtsCI GGATG 2 cut(s) 152, 622
Cac8I GCNNGC 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 328, 387
Csp6I GTAC 2 cut(s) 19, 472
CviAII CATG 5 cut(s) 77, 421, 425, 554, 751
CviJI RGCY 7 cut(s) 118, 164, 398, 404, 464, 515, 533
CviKI_1 RGCY 7 cut(s) 118, 164, 398, 404, 464, 515, 533
CviQI GTAC 2 cut(s) 19, 472
DdeI CTNAG 4 cut(s) 114, 332, 363, 450
DpnI GATC 2 cut(s) 141, 478
DpnII GATC 2 cut(s) 139, 476
Eam1104I CTCTTC 2 cut(s) 97, 242
EarI CTCTTC 2 cut(s) 97, 242
Eco147I AGGCCT 1 cut(s) 533
Eco47I GGWCC 2 cut(s) 328, 387
Eco57I CTGAAG 2 cut(s) 37, 710
EcoNI CCTNNNNNAGG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 328
EcoT22I ATGCAT 2 cut(s) 78, 426
FaeI CATG 5 cut(s) 80, 424, 428, 557, 754
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 1 cut(s) 699
FatI CATG 5 cut(s) 76, 420, 424, 553, 750
Fnu4HI GCNGC 1 cut(s) 458
FokI GGATG 2 cut(s) 139, 629
Fsp4HI GCNGC 1 cut(s) 458
FspBI CTAG 4 cut(s) 231, 399, 708, 778
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 533
Hin1II CATG 5 cut(s) 80, 424, 428, 557, 754
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 4 cut(s) 149, 701, 726, 733
HphI GGTGA 1 cut(s) 685
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 69, 598
Hpy188III TCNNGA 6 cut(s) 137, 231, 362, 416, 708, 730
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 211, 594
HpyCH4V TGCA 9 cut(s) 76, 180, 276, 282, 346, 424, 457, 557, 680
HpyF3I CTNAG 4 cut(s) 114, 332, 363, 450
Hsp92II CATG 5 cut(s) 80, 424, 428, 557, 754
Kzo9I GATC 2 cut(s) 139, 476
LpnPI CCDG 5 cut(s) 40, 122, 375, 456, 496
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 333
MaeI CTAG 4 cut(s) 231, 399, 708, 778
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 141, 478
MboI GATC 2 cut(s) 139, 476
MboII GAAGA 7 cut(s) 114, 140, 259, 593, 696, 703, 726
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 1 cut(s) 476
MluCI AATT 8 cut(s) 143, 175, 357, 435, 539, 563, 576, 737
MlyI GAGTC 1 cut(s) 742
MnlI CCTC 3 cut(s) 167, 475, 704
Mph1103I ATGCAT 2 cut(s) 78, 426
MroXI GAANNNNTTC 2 cut(s) 132, 411
MseI TTAA 2 cut(s) 377, 506
MslI CAYNNNNRTG 1 cut(s) 429
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 2 cut(s) 610, 682
NdeII GATC 2 cut(s) 139, 476
NlaIII CATG 5 cut(s) 80, 424, 428, 557, 754
NsiI ATGCAT 2 cut(s) 78, 426
NspI RCATGY 3 cut(s) 80, 424, 557
PceI AGGCCT 1 cut(s) 533
PctI GAATGC 2 cut(s) 610, 682
PdmI GAANNNNTTC 2 cut(s) 132, 411
PfeI GAWTC 3 cut(s) 149, 701, 726
PkrI GCNGC 1 cut(s) 459
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspPI GGNCC 2 cut(s) 328, 387
PspPPI RGGWCCY 1 cut(s) 328
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 20, 473
RsaNI GTAC 2 cut(s) 19, 472
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 2 cut(s) 377, 506
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 2 cut(s) 139, 476
Sau96I GGNCC 2 cut(s) 328, 387
SchI GAGTC 1 cut(s) 742
SetI ASST 8 cut(s) 20, 59, 120, 166, 330, 400, 406, 494
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 2 cut(s) 328, 387
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 8 cut(s) 143, 175, 357, 435, 539, 563, 576, 737
SseBI AGGCCT 1 cut(s) 533
SspMI CTAG 4 cut(s) 231, 399, 708, 778
StuI AGGCCT 1 cut(s) 533
TaaI ACNGT 2 cut(s) 211, 594
TaqI TCGA 1 cut(s) 159
TasI AATT 8 cut(s) 143, 175, 357, 435, 539, 563, 576, 737
TfiI GAWTC 3 cut(s) 149, 701, 726
Tru1I TTAA 2 cut(s) 377, 506
Tru9I TTAA 2 cut(s) 377, 506
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 5 cut(s) 108, 311, 540, 617, 639
VpaK11BI GGWCC 2 cut(s) 328, 387
XagI CCTNNNNNAGG 1 cut(s) 496
XapI RAATTY 2 cut(s) 357, 435
XbaI TCTAGA 2 cut(s) 230, 707
XceI RCATGY 3 cut(s) 80, 424, 557
XmnI GAANNNNTTC 2 cut(s) 132, 411
XspI CTAG 4 cut(s) 231, 399, 708, 778
Zsp2I ATGCAT 2 cut(s) 78, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.