Rmu_sc0007390.1_g000014

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007390.1
OG0000414
Physical Location & Seq
Reverse (-)
72112 .. 73302
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007390.1_g000014.1.cds

Sequence Viewer

Length: 1191 bp
atgatgagacagctagctgaatcttttaagtggttgttccagacattcttagaagcacataagcaaaaaaagccaaagactatatttacaaagcaagatcctgcaatggaaaatgcattggccgaggtgcttccagatacgtttcatggattatgtagttggcatataatgcaaaatggaatcaagcatttgggatacctgatgaaggatggctcattttttcttacagattttgcagcatgcatgtatgagcacgaggaagagaaagaatttgaagatgcttggaatgctatgctatgcaaatataatgtttggagcaatccatggttggaaaagatatatgaaattaaggagaaatgggctaaatgttacatgaaagaggtatttacaactggtacgcgaagtacacagcttagtgaaagcctgaacagtgatttaaaagcttacttaaagtcaaacatggatatcatgcgtttttttaaacagtttgaaagggtcgctaatgaaaagcactataaggagctagaagctgagtataattctaggcaaaagttaccgagagtgaaggtacaaaaatcacctgtactacaacaagcagcgaaaatctacactccatcaatctttgaaaagtatttccaagaagaatttgattggtcttcagcagctattataaaacagcgtgaggaatctactcatacacatgagtatacgattgccattgtagatgaaaaaagagagcataaggagcataaggtgaaatttcaaacttcagaccaaagtatcttatgcagttgcatgaaatttcagagttttggaattttgtgttgtcatgctctgaaagttcttgatgtatgggatattaaaagaattcctgatcaatatattcttaagaggtggactagggaggcaagaaatgaggctgttgcaagcatgaatgaagccaatgtaatggaagataagaaattgactatagctgagcgatatagaacagcttgccctatattagttgatattgcatctcgagcatctggagatgaaaaagcctttgaattggtaatgaaaatcgcacatgagttaagaaaacaggttgaagacatcttcttggacaactcaacaacgagtattgatgaactgcataattcttcgcaaggtgggggtgagaggatggttcaagaaagtcaaacttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

396

Amino Acids

46.54

Weight (kDa)

6.39

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AccI GTMKAC 1 cut(s) 707
AccII CGCG 1 cut(s) 400
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 6 cut(s) 269, 644, 758, 800, 816, 867
AcuI CTGAAG 2 cut(s) 642, 753
AfaI GTAC 4 cut(s) 397, 406, 570, 585
AfiI CCNNNNNNNGG 1 cut(s) 205
AflII CTTAAG 1 cut(s) 887
AgsI TTSAA 7 cut(s) 275, 491, 626, 764, 1049, 1091, 1172
AluBI AGCT 9 cut(s) 13, 17, 412, 443, 523, 530, 665, 974, 992
AluI AGCT 9 cut(s) 13, 17, 412, 443, 523, 530, 665, 974, 992
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 1020
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 236, 596, 662
ApoI RAATTY 6 cut(s) 269, 644, 758, 800, 816, 867
AsuHPI GGTGA 3 cut(s) 570, 766, 1169
AsuNHI GCTAGC 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 1020
BaeI ACNNNNGTAYC 2 cut(s) 763, 796
BauI CACGAG 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 648, 1098
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 248, 608, 674
BccI CCATC 3 cut(s) 203, 622, 1159
BciVI GTATCC 1 cut(s) 188
BclI TGATCA 1 cut(s) 874
BfaI CTAG 4 cut(s) 14, 524, 543, 900
BfmI CTRYAG 1 cut(s) 969
BfrI CTTAAG 1 cut(s) 887
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 3 cut(s) 237, 597, 663
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 3 cut(s) 238, 598, 664
BmeT110I CYCGRG 1 cut(s) 1020
BmsI GCATC 3 cut(s) 268, 1025, 1034
BmtI GCTAGC 1 cut(s) 17
BpiI GAAGAC 2 cut(s) 648, 1098
BpmI CTGGAG 1 cut(s) 1050
Bpu1102I GCTNAGC 1 cut(s) 975
BsaJI CCNNGG 2 cut(s) 123, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 123, 323
BseGI GGATG 2 cut(s) 214, 1170
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 522, 966
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 3 cut(s) 248, 608, 674
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 1020
BslI CCNNNNNNNGG 1 cut(s) 205
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 1020
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 97, 874
Bsp1720I GCTNAGC 1 cut(s) 975
Bsp19I CCATGG 1 cut(s) 323
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 523, 967
BspFNI CGCG 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 123, 323
BssMI GATC 2 cut(s) 97, 874
BssNAI GTATAC 1 cut(s) 708
BssSI CACGAG 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 323
Bst1107I GTATAC 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 431, 486
Bst6I CTCTTC 1 cut(s) 255
BstAFI CTTAAG 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 4 cut(s) 15, 241, 928, 994
BstDEI CTNAG 4 cut(s) 49, 413, 531, 975
BstDSI CCRYGG 1 cut(s) 323
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 214, 1170
BstFNI CGCG 1 cut(s) 400
BstKTI GATC 2 cut(s) 100, 877
BstMBI GATC 2 cut(s) 97, 874
BstMWI GCNNNNNNNGC 5 cut(s) 70, 169, 287, 745, 1022
BstNSI RCATGY 2 cut(s) 243, 247
BstSFI CTRYAG 1 cut(s) 969
BstUI CGCG 1 cut(s) 400
BstV1I GCAGC 3 cut(s) 248, 608, 674
BstV2I GAAGAC 2 cut(s) 648, 1098
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 949
BstYI RGATCY 1 cut(s) 97
BstZ17I GTATAC 1 cut(s) 708
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 214, 1170
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 4 cut(s) 15, 241, 928, 994
Csp6I GTAC 4 cut(s) 396, 405, 569, 584
CviQI GTAC 4 cut(s) 396, 405, 569, 584
DdeI CTNAG 4 cut(s) 49, 413, 531, 975
DpnI GATC 2 cut(s) 99, 876
DpnII GATC 2 cut(s) 97, 874
DraI TTTAAA 2 cut(s) 438, 481
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 323
Eco32I GATATC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 642, 753
Eco88I CYCGRG 1 cut(s) 1020
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 867
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 323
EcoT22I ATGCAT 2 cut(s) 118, 245
ErhI CCWWGG 1 cut(s) 323
FalI AAGNNNNNCTT 1 cut(s) 1168
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 3 cut(s) 237, 597, 663
FokI GGATG 2 cut(s) 221, 1177
Fsp4HI GCNGC 3 cut(s) 237, 597, 663
FspBI CTAG 4 cut(s) 14, 524, 543, 900
GluI GCNGC 3 cut(s) 237, 597, 663
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 20, 180, 686
HphI GGTGA 3 cut(s) 570, 766, 1169
Hpy166II GTNNAC 3 cut(s) 407, 708, 897
Hpy188I TCNGA 3 cut(s) 772, 807, 837
Hpy188III TCNNGA 7 cut(s) 40, 134, 845, 872, 1020, 1029, 1172
Hpy8I GTNNAC 3 cut(s) 407, 708, 897
HpyAV CCTTC 2 cut(s) 199, 559
HpyCH4III ACNGT 2 cut(s) 431, 486
HpyCH4IV ACGT 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 169, 287, 745, 1022
HpyF3I CTNAG 4 cut(s) 49, 413, 531, 975
HpySE526I ACGT 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 2 cut(s) 97, 874
LmnI GCTCC 3 cut(s) 315, 520, 745
Lsp1109I GCAGC 3 cut(s) 248, 608, 674
LweI GCATC 3 cut(s) 268, 1025, 1034
MaeI CTAG 4 cut(s) 14, 524, 543, 900
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 368, 552
MalI GATC 2 cut(s) 99, 876
MboI GATC 2 cut(s) 97, 874
MboII GAAGA 8 cut(s) 272, 287, 648, 653, 965, 1090, 1103, 1134
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 8 cut(s) 118, 250, 373, 676, 885, 898, 910, 1155
Mph1103I ATGCAT 2 cut(s) 118, 245
MseI TTAA 8 cut(s) 27, 348, 437, 449, 480, 861, 888, 1076
MslI CAYNNNNRTG 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 887
Mva1269I GAATGC 1 cut(s) 292
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 5 cut(s) 70, 169, 287, 745, 1022
NcoI CCATGG 1 cut(s) 323
NdeII GATC 2 cut(s) 97, 874
NheI GCTAGC 1 cut(s) 13
NmeAIII GCCGAG 1 cut(s) 148
NsiI ATGCAT 2 cut(s) 118, 245
NspI RCATGY 2 cut(s) 243, 247
PaeI GCATGC 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 1020
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 20, 180, 686
PkrI GCNGC 3 cut(s) 238, 598, 664
PsiI TTATAA 1 cut(s) 671
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 4 cut(s) 397, 406, 570, 585
RsaNI GTAC 4 cut(s) 396, 405, 569, 584
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 8 cut(s) 27, 348, 437, 449, 480, 861, 888, 1076
SatI GCNGC 3 cut(s) 237, 597, 663
Sau3AI GATC 2 cut(s) 97, 874
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 3 cut(s) 268, 1025, 1034
SfcI CTRYAG 1 cut(s) 969
Sfr274I CTCGAG 1 cut(s) 1020
SlaI CTCGAG 1 cut(s) 1020
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 887, 1020
SmoI CTYRAG 2 cut(s) 887, 1020
SphI GCATGC 1 cut(s) 243
SspMI CTAG 4 cut(s) 14, 524, 543, 900
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 431, 486
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 1021
TatI WGTACW 2 cut(s) 404, 583
TfiI GAWTC 3 cut(s) 20, 180, 686
Tru1I TTAA 8 cut(s) 27, 348, 437, 449, 480, 861, 888, 1076
Tru9I TTAA 8 cut(s) 27, 348, 437, 449, 480, 861, 888, 1076
TscAI CASTG 1 cut(s) 436
TseI GCWGC 3 cut(s) 236, 596, 662
TspRI CASTG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 887
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 6 cut(s) 269, 644, 758, 800, 816, 867
XceI RCATGY 2 cut(s) 243, 247
XhoI CTCGAG 1 cut(s) 1020
XmiI GTMKAC 1 cut(s) 707
XspI CTAG 4 cut(s) 14, 524, 543, 900
Zsp2I ATGCAT 2 cut(s) 118, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.