RLG00000027779

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000414
Physical Location & Seq
Reverse (-)
15098079 .. 15098599
521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027779

Sequence Viewer

Length: 321 bp
ATGTCTTCGGCAACAATTGAATCTTTTCGATCTCATACCACTGCTATGCTTCCAAGGGCTTTTCATCCTGTTGGAGCGTTTCAAGCTCGGCTGTTACTATTTCCTTTGCGATGTGGTGATGGCTGCGCTGAGGTTGAGTTGGAATCAATCGAATTGACTAGGCTTGGCTATGGCGCCGGCGGGTTTGTTCTGGATTTAATCCGCGATGGTGCAAGTTCTGAGGTTTGGGTTGCCGATGGTGGCCTGACCACTGATGCTGGTGTAGTGGTGTTTACTAATCAGGTTGGATTTGGATCCCATACCTCTGAGTTTGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.19

Weight (kDa)

4.76

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 180, 202
AclWI GGATC 2 cut(s) 288, 301
AcyI GRCGYC 1 cut(s) 174
AgsI TTSAA 2 cut(s) 20, 83
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AlwI GGATC 2 cut(s) 288, 301
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 2 cut(s) 128, 176
AsuHPI GGTGA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 113, 200, 230
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 175, 295
BmsI GCATC 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 292
BseMII CTCAG 3 cut(s) 120, 210, 297
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 29, 293
BspACI CCGC 2 cut(s) 180, 202
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 121, 211, 298
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 175, 295
BspPI GGATC 2 cut(s) 288, 301
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 2 cut(s) 29, 293
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 129, 219, 306
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 128, 176
BstKTI GATC 2 cut(s) 32, 296
BstMBI GATC 2 cut(s) 29, 293
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 1 cut(s) 243
BtgZI GCGATG 2 cut(s) 124, 219
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 249
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 2 cut(s) 128, 176
Cfr10I RCCGGY 1 cut(s) 176
CviJI RGCY 8 cut(s) 59, 86, 91, 123, 163, 168, 243, 316
CviKI_1 RGCY 8 cut(s) 59, 86, 91, 123, 163, 168, 243, 316
DdeI CTNAG 3 cut(s) 129, 219, 306
DinI GGCGCC 1 cut(s) 175
DpnI GATC 2 cut(s) 31, 295
DpnII GATC 2 cut(s) 29, 293
Eco130I CCWWGG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 53
FaiI YATR 4 cut(s) 36, 47, 171, 300
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 127, 175
GluI GCNGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 177
HhaI GCGC 2 cut(s) 128, 176
Hin1I GRCGYC 1 cut(s) 174
Hin6I GCGC 2 cut(s) 126, 174
HinP1I GCGC 2 cut(s) 126, 174
HinfI GANTC 2 cut(s) 20, 143
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 220, 307
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 3 cut(s) 129, 219, 306
Hsp92I GRCGYC 1 cut(s) 174
HspAI GCGC 2 cut(s) 126, 174
KasI GGCGCC 1 cut(s) 173
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 29, 293
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 81, 176, 190, 243, 257, 266
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 93
MalI GATC 2 cut(s) 31, 295
MboI GATC 2 cut(s) 29, 293
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 293
MluCI AATT 2 cut(s) 15, 152
Mly113I GGCGCC 1 cut(s) 174
MmeI TCCRAC 3 cut(s) 52, 120, 265
MnlI CCTC 3 cut(s) 124, 214, 313
MreI CGCCGGCG 1 cut(s) 176
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 15
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 83
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 174
NdeII GATC 2 cut(s) 29, 293
NgoMIV GCCGGC 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 175, 295
NmeAIII GCCGAG 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 20, 143
PkrI GCNGC 1 cut(s) 125
PluTI GGCGCC 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 175, 295
PsuI RGATCY 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 2 cut(s) 29, 293
SetI ASST 5 cut(s) 88, 135, 225, 285, 305
SfaNI GCATC 1 cut(s) 244
SfoI GGCGCC 1 cut(s) 175
SgrAI CRCCGGYG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 2 cut(s) 15, 152
SsiI CCGC 2 cut(s) 180, 202
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 53
TaqI TCGA 2 cut(s) 28, 150
TasI AATT 2 cut(s) 15, 152
TfiI GAWTC 2 cut(s) 20, 143
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 2 cut(s) 46, 256
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 2 cut(s) 46, 256
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.