Rh5BG550100

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000414
Physical Location & Seq
Forward (+)
87373033 .. 87434984
61952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG550100.1

Sequence Viewer

Length: 3279 bp
ATGCCGCCACGACCCGATCCTAGGATGGCAGCCGTGTTAAGGGCATTCGAAGCCCTAGGCAATGCCCCGGAACAGACCCCGGAAGAACTTGAAAGATATAGGGTGACGCAATGCTTGGAGCAGTTCACCAAGCTTAAACCACCCCAGTTCAACGGAATCGGTGAAGCCTGCGAGGCCGAAAACTGGTTGAGGCAAATCTTGAAGATCTTGGATATCTTAAGGACACCGGAGCAGTATCGTGTGTCCCTAGCTGTACACCAGCTTGTCGGGGAGGCTGACAACTGGTGGGATACCGTCCGTAGCCTACGGACTGTCGCTGATTTAACTTGGGCAGAGTTCGAGCAACTCTTTCTGGAGAGATTCTTTCCACCTGTTCTGAAGGCACATAAGATCAGTGAGTTCTTTTCTTTGACCCAAGGAAACATGACCACTCATGAGTATGTTGTGGCCTTCACACGACTACTTAAGTACGTGCCAGCAATCGCCAATGACGATCAGATGAAGAAACAGAGGTTCATGGCGGGACTCCGAGACTCGATTCGACGCGAGTTACGCTCAGACACTACCTTGAGCTACAGTGAGTCTGTAGCCGCCGCCTACGCCATCGAGGCTGATGAAGCTGCATACCCAAGACGTGGGAATGGTCAGGGAAGCTCTCACCCACGGAAGAATCACTGGGTGCACCGGAGGAAGCTCCGAGGAGGAAACTTCCAAGGAAATGCCAGTTCCAGCAGTAGCAGTGGATCTTCAGGAAGACGGGGCCCTGCACCTTACACTTGTTTTGCTTGTGGCCAACCTGGACACACCAAGGTTCGCTGCCCGTTTGTTAACAACTCACAAGGAGCGTCTTCTGGCTCAGGATTCCAGAATCCGAGGCCAGCTCAGTCACTATCGACTCAGATATCACCAGCACCATATCGACCACCGAACCCTACTCAACAGCAGTACCAACAACCTCAGCCGCTGGCAGTGAGGTATGACCAGCAGATCACTGCACCACGACCTGCCAACCAGGCAAACCGAGGAAGAAACCGTGGAGGACGCAACCAGGGAGGACGTGGACAACTGAATGCAATCACCGGTGGAGAGACCACTGATGTTATGGGCTCAGGCACCGCACTAGCTGGTACGATACTCATCTCTAACTCTGAGGCTAGAGTTTTGCTTGACACTGGTGCATCTCATTCATTCATCACTACATGGTTAGCTGAGTCACTAGAACTAGAACCAACCCCGCTAGACGGAGTTTTCGACTTTAACACACCGCTTGGTGTGGGGACTGGAGTAGACAAAGTCTATAGGAAGTGCCAAGTTGTTATTGGCGGTAGGAAGCTCCAAGCCGATCTCTATCCAATTGAGTTGTACGATTTTGATCTAATTCTCGGGATGGACTGGCTGAGCAATTTGACTCCTGTTACGATGCCGCCACGACCCGATCCTAGGATGGCAGCCGTGTTAAGGGCATTCGAAGCCCTAGGCAATGCCCCGGAACAGACCCCGGAAGAACTTGAAAGATATAGGGTGACGCAATGCTTGGAGCAGTTCACCAAGCTTAAACCACCCCAGTTCAACGGAATCGGTGAAGCCTGCGAGGCCGAAAACTGGTTGAGGCAAATCTTGAAGATCTTGGATATCTTAAGGACACCGGAGCAGTATCGTGTGTCCCTAGCTGTACACCAGCTTGTCGGGGAGGCTGACAACTGGTGGGATACCGTCCGTAGCCTACGGACTGTCGCTGATTTAACTTGGGCAGAGTTCGAGCAACTCTTTCTGGAGAGATTCTTTCCACCTGTTCTGAAGGCACATAAGATCAGTGAGTTCTTTTCTTTGACCCAAGGAAACATGACCACTCATGAGTATGTTGTGGCCTTCACACGACTACTTAAGTACGTGCCAGCAATCGCCAATGACGATCAGATGAAGAAACAGAGGTTCATGGCGGGACTCCGAGACTCGATTCGACGCGAGTTACGCTCAGACACTACCTTGAGCTACAGTGAGTCTGTAGCCGCCGCCTACGCCATCGAGGCTGATGAAGCTGCATACCCAAGACGTGGGAATGGTCAGGGAAGCTCTCACCCACGGAAGAATCACTGGGTGCACCGGAGGAAGCTCCGAGGAGGAAACTTCCAAGGAAATGCCAGTTCCAGCAGTAGCAGTGGATCTTCAGGAAGACGGGGCCCTGCACCTTACACTTGTTTTGCTTGTGGCCAACCTGGACACACCAAGGTTCGCTGCCCGTTTGTTAACAACTCACAAGGAGCGTCTTCTGGCTCAGGATTCCAGAATCCGAGGCCAGCTCAGTCACTATCGACTCAGATATCACCAGCACCATATCGACCACCGAACCCTACTCAACAGCAGTACCAACAACCTCAGCCGCTGGCAGTGAGGTATGACCAGCAGATCACTGCACCACGACCTGCCAACCAGGCAAACCGAGGAAGAAACCGTGGAGGACGCAACCAGGGAGGACGTGGACAACTGAATGCAATCACCGGTGGAGAGACCACTGATGTTATGGGCTCAGGCACCGCACTAGCTGGTACGATACTCATCTCTAACTCTGAGGCTAGAGTTTTGCTTGACACTGGTGCATCTCATTCATTCATCACTACATGGTTAGCTGAGTCACTAGAACTAGAACCAACCCCGCTAGACGGAGTTTTCGACTTTAACACACCGCTTGGTGTGGGGACTGGAGTAGACAAAGTCTATAGGAAGTGCCAAGTTGTTATTGGCGGTAGGAAGCTCCAAGCCGATCTCTATCCAATTGAGTTGTACGATTTTGATCTAATTCTCGGGATGGACTGGCTGAGCAAGTACAGAGCACTCATCGATTGCGATCGACGCGCCGTACGAATCACCCCACCAAGCAGGGAGGCCTTCGAAATAAAAATGGCAGAACCCCTCTTACCTCCAAGTTCACTACTGAAGGCTTGTTTTCGAGGGAGGAGAACGCTCGCTTGTTACAGCATTATCGCTGCAGGGGAAAAGACAAACGTGGAGTCCAACAGCTACGTGCCGATTGTAGACGAGTACCCCGACGTTACTCCTGATCAAATGAATGATGTATACAAGATGACTTTTGATCCAAGATGTAATGAAGAGAATGCTACTCTTGATCTAACAAACAATGTAGAGAATGATGCTTCTGTTATAACAAGTAATGCAGATCAATTTCTGGAACAAGACTTTTGTGCATCTTCACTTAGTCAGTTGGTTTCCCAAAAGAATTCTGCATTACACAAACTAACACAAATTGGTATCCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 Retrotrans_gag zf-CCHC

Protein Analysis

1092

Amino Acids

121.22

Weight (kDa)

8.57

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 36 - 202 4.7e-13 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 83 - 178 7.3e-21 Retrotransposon gag protein
RVP_2 PF08284 354 - 468 4.1e-21 Retroviral aspartyl protease
gag-asp_proteas PF13975 379 - 468 1.7e-08 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 380 - 465 1.4e-06 Aspartyl protease
Ty3_capsid PF19259 509 - 675 4.7e-13 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 556 - 651 7.3e-21 Retrotransposon gag protein
RVP_2 PF08284 827 - 957 8.2e-27 Retroviral aspartyl protease
gag-asp_proteas PF13975 852 - 940 2e-08 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 853 - 938 1.4e-06 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3161
Acc36I ACCTGC 2 cut(s) 1012, 2431
AccB1I GGYRCC 2 cut(s) 1112, 2531
AccB7I CCANNNNNTGG 2 cut(s) 635, 2054
AccI GTMKAC 4 cut(s) 1287, 2706, 3033, 3075
AccII CGCG 3 cut(s) 546, 1965, 2853
AclWI GGATC 5 cut(s) 11, 751, 1430, 2170, 3086
AcoI YGGCCR 2 cut(s) 790, 2209
AcsI RAATTY 1 cut(s) 3235
AcuI CTGAAG 5 cut(s) 398, 732, 1817, 2151, 2954
AdeI CACNNNGTG 2 cut(s) 679, 2098
AflII CTTAAG 4 cut(s) 217, 464, 1636, 1883
AgeI ACCGGT 2 cut(s) 1079, 2498
AgsI TTSAA 6 cut(s) 92, 151, 202, 1511, 1570, 1621
AjiI CACGTC 4 cut(s) 635, 1058, 2054, 2477
AjnI CCWGG 6 cut(s) 796, 1011, 1047, 2215, 2430, 2466
Alw21I GWGCWC 3 cut(s) 684, 2103, 2833
Alw26I GTCTC 4 cut(s) 525, 1082, 1944, 2501
Alw44I GTGCAC 2 cut(s) 680, 2099
AlwI GGATC 5 cut(s) 11, 751, 1430, 2170, 3086
AlwNI CAGNNNCTG 2 cut(s) 964, 2383
Ama87I CYCGRG 2 cut(s) 1382, 2801
ApaI GGGCCC 2 cut(s) 764, 2183
ApaLI GTGCAC 2 cut(s) 680, 2099
ApeKI GCWGC 7 cut(s) 29, 620, 816, 1448, 2039, 2235, 2984
ApoI RAATTY 1 cut(s) 3235
ArsI GACNNNNNNTTYG 6 cut(s) 1232, 1264, 2651, 2683, 2993, 3025
AsiGI ACCGGT 2 cut(s) 1079, 2498
AspA2I CCTAGG 4 cut(s) 20, 55, 1439, 1474
AspLEI GCGC 1 cut(s) 2855
AspS9I GGNCC 4 cut(s) 760, 761, 2179, 2180
AsuC2I CCSGG 4 cut(s) 68, 80, 1487, 1499
AsuII TTCGAA 3 cut(s) 48, 1467, 2889
AvaI CYCGRG 2 cut(s) 1382, 2801
AvrII CCTAGG 4 cut(s) 20, 55, 1439, 1474
BaeGI GKGCMC 4 cut(s) 684, 764, 2103, 2183
BaeI ACNNNNGTAYC 4 cut(s) 929, 962, 2348, 2381
BalI TGGCCA 2 cut(s) 792, 2211
BanI GGYRCC 2 cut(s) 1112, 2531
BanII GRGCYC 4 cut(s) 764, 1109, 2183, 2528
BbsI GAAGAC 4 cut(s) 760, 840, 2179, 2259
Bbv12I GWGCWC 3 cut(s) 684, 2103, 2833
BbvCI CCTCAGC 2 cut(s) 957, 2376
BbvI GCAGC 7 cut(s) 41, 607, 803, 1460, 2026, 2222, 2971
BccI CCATC 6 cut(s) 19, 611, 1381, 1438, 2030, 2800
BceAI ACGGC 3 cut(s) 17, 1436, 2840
BciT130I CCWGG 6 cut(s) 798, 1013, 1049, 2217, 2432, 2468
BciVI GTATCC 3 cut(s) 283, 1702, 3278
BclI TGATCA 1 cut(s) 3058
BcnI CCSGG 4 cut(s) 68, 80, 1487, 1499
BcoDI GTCTC 4 cut(s) 525, 1082, 1944, 2501
BfmI CTRYAG 7 cut(s) 574, 585, 1297, 1993, 2004, 2716, 2985
BfrI CTTAAG 4 cut(s) 217, 464, 1636, 1883
BfuAI ACCTGC 2 cut(s) 1012, 2431
BfuI GTATCC 3 cut(s) 283, 1702, 3278
BglI GCCNNNNNGGC 6 cut(s) 173, 608, 1013, 1592, 2027, 2432
BglII AGATCT 2 cut(s) 204, 1623
BlnI CCTAGG 4 cut(s) 20, 55, 1439, 1474
BlpI GCTNAGC 2 cut(s) 1397, 2816
BmeT110I CYCGRG 2 cut(s) 1382, 2801
BmgBI CACGTC 4 cut(s) 635, 1058, 2054, 2477
BmgT120I GGNCC 4 cut(s) 760, 761, 2179, 2180
BmiI GGNNCC 6 cut(s) 761, 762, 1114, 2180, 2181, 2533
BmrI ACTGGG 4 cut(s) 139, 685, 1558, 2104
BmsI GCATC 5 cut(s) 1187, 1410, 2606, 3139, 3212
BmuI ACTGGG 4 cut(s) 139, 685, 1558, 2104
BpiI GAAGAC 4 cut(s) 760, 840, 2179, 2259
BplI GAGNNNNNCTC 8 cut(s) 539, 571, 865, 897, 1958, 1990, 2284, 2316
BpmI CTGGAG 4 cut(s) 374, 1302, 1793, 2721
Bpu10I CCTNAGC 6 cut(s) 856, 957, 1108, 2275, 2376, 2527
Bpu1102I GCTNAGC 2 cut(s) 1397, 2816
Bpu14I TTCGAA 3 cut(s) 48, 1467, 2889
BpuEI CTTGAG 2 cut(s) 589, 2008
BpuMI CCSGG 4 cut(s) 68, 80, 1487, 1499
Bsa29I ATCGAT 1 cut(s) 2838
BsaAI YACGTR 3 cut(s) 472, 1891, 3022
BsaBI GATNNNNATC 7 cut(s) 1136, 1347, 1371, 2555, 2766, 2790, 2844
BsaI GGTCTC 2 cut(s) 1082, 2501
BsaWI WCCGGW 6 cut(s) 226, 684, 1079, 1645, 2103, 2498
Bse118I RCCGGY 2 cut(s) 1079, 2498
Bse3DI GCAATG 4 cut(s) 67, 116, 1486, 1535
Bse8I GATNNNNATC 7 cut(s) 1136, 1347, 1371, 2555, 2766, 2790, 2844
BseBI CCWGG 6 cut(s) 798, 1013, 1049, 2217, 2432, 2468
BseCI ATCGAT 1 cut(s) 2838
BseGI GGATG 4 cut(s) 30, 1392, 1449, 2811
BseJI GATNNNNATC 7 cut(s) 1136, 1347, 1371, 2555, 2766, 2790, 2844
BseMI GCAATG 4 cut(s) 67, 116, 1486, 1535
BseRI GAGGAG 3 cut(s) 714, 2133, 2968
BseSI GKGCMC 4 cut(s) 684, 764, 2103, 2183
BseXI GCAGC 7 cut(s) 41, 607, 803, 1460, 2026, 2222, 2971
BsgI GTGCAG 4 cut(s) 750, 978, 2169, 2397
Bsh1236I CGCG 3 cut(s) 546, 1965, 2853
Bsh1285I CGRYCG 1 cut(s) 2848
BshNI GGYRCC 2 cut(s) 1112, 2531
BshTI ACCGGT 2 cut(s) 1079, 2498
BshVI ATCGAT 1 cut(s) 2838
BsiEI CGRYCG 1 cut(s) 2848
BsiHKAI GWGCWC 3 cut(s) 684, 2103, 2833
BsiHKCI CYCGRG 2 cut(s) 1382, 2801
BsiWI CGTACG 1 cut(s) 2857
BslFI GGGAC 6 cut(s) 229, 537, 1291, 1648, 1956, 2710
BsmAI GTCTC 4 cut(s) 525, 1082, 1944, 2501
BsmFI GGGAC 6 cut(s) 229, 537, 1291, 1648, 1956, 2710
BsmI GAATGC 5 cut(s) 44, 1075, 1463, 2494, 3118
Bso31I GGTCTC 2 cut(s) 1082, 2501
BsoBI CYCGRG 2 cut(s) 1382, 2801
Bsp119I TTCGAA 3 cut(s) 48, 1467, 2889
Bsp120I GGGCCC 2 cut(s) 760, 2179
Bsp1286I GDGCHC 7 cut(s) 684, 764, 1109, 2103, 2183, 2528, 2833
Bsp1407I TGTACA 2 cut(s) 253, 1672
Bsp1720I GCTNAGC 2 cut(s) 1397, 2816
BspDI ATCGAT 1 cut(s) 2838
BspFNI CGCG 3 cut(s) 546, 1965, 2853
BspHI TCATGA 2 cut(s) 433, 1852
BspLI GGNNCC 6 cut(s) 761, 762, 1114, 2180, 2181, 2533
BspMAI CTGCAG 1 cut(s) 2989
BspMI ACCTGC 2 cut(s) 1012, 2431
BspPI GGATC 5 cut(s) 11, 751, 1430, 2170, 3086
BspT104I TTCGAA 3 cut(s) 48, 1467, 2889
BspT107I GGYRCC 2 cut(s) 1112, 2531
BspTI CTTAAG 4 cut(s) 217, 464, 1636, 1883
BspTNI GGTCTC 2 cut(s) 1082, 2501
BsrDI GCAATG 4 cut(s) 67, 116, 1486, 1535
BsrFI RCCGGY 2 cut(s) 1079, 2498
BsrGI TGTACA 2 cut(s) 253, 1672
BssAI RCCGGY 2 cut(s) 1079, 2498
BssNAI GTATAC 1 cut(s) 3076
Bst1107I GTATAC 1 cut(s) 3076
Bst2UI CCWGG 6 cut(s) 798, 1013, 1049, 2217, 2432, 2468
Bst4CI ACNGT 8 cut(s) 295, 313, 578, 1034, 1714, 1732, 1997, 2453
Bst6I CTCTTC 1 cut(s) 3102
BstAFI CTTAAG 4 cut(s) 217, 464, 1636, 1883
BstAUI TGTACA 2 cut(s) 253, 1672
BstBAI YACGTR 3 cut(s) 472, 1891, 3022
BstBI TTCGAA 3 cut(s) 48, 1467, 2889
BstC8I GCNNGC 9 cut(s) 169, 477, 879, 966, 1588, 1896, 2298, 2385, 2964
BstDSI CCRYGG 4 cut(s) 662, 1033, 2081, 2452
BstF5I GGATG 4 cut(s) 30, 1392, 1449, 2811
BstFNI CGCG 3 cut(s) 546, 1965, 2853
BstHHI GCGC 1 cut(s) 2855
BstMAI GTCTC 4 cut(s) 525, 1082, 1944, 2501
BstMCI CGRYCG 1 cut(s) 2848
BstNI CCWGG 6 cut(s) 798, 1013, 1049, 2217, 2432, 2468
BstSFI CTRYAG 7 cut(s) 574, 585, 1297, 1993, 2004, 2716, 2985
BstSLI GKGCMC 4 cut(s) 684, 764, 2103, 2183
BstUI CGCG 3 cut(s) 546, 1965, 2853
BstV1I GCAGC 7 cut(s) 41, 607, 803, 1460, 2026, 2222, 2971
BstV2I GAAGAC 4 cut(s) 760, 840, 2179, 2259
BstX2I RGATCY 4 cut(s) 204, 743, 1623, 2162
BstYI RGATCY 4 cut(s) 204, 743, 1623, 2162
BstZ17I GTATAC 1 cut(s) 3076
Bsu15I ATCGAT 1 cut(s) 2838
BsuI GTATCC 3 cut(s) 283, 1702, 3278
BsuTUI ATCGAT 1 cut(s) 2838
BtgI CCRYGG 4 cut(s) 662, 1033, 2081, 2452
BtrI CACGTC 4 cut(s) 635, 1058, 2054, 2477
BtsCI GGATG 4 cut(s) 30, 1392, 1449, 2811
BtsI GCAGTG 6 cut(s) 745, 975, 990, 2164, 2394, 2409
BveI ACCTGC 2 cut(s) 1012, 2431
Cac8I GCNNGC 9 cut(s) 169, 477, 879, 966, 1588, 1896, 2298, 2385, 2964
CaiI CAGNNNCTG 2 cut(s) 964, 2383
CciI TCATGA 2 cut(s) 433, 1852
CfoI GCGC 1 cut(s) 2855
Cfr10I RCCGGY 2 cut(s) 1079, 2498
Cfr13I GGNCC 4 cut(s) 760, 761, 2179, 2180
ClaI ATCGAT 1 cut(s) 2838
CseI GACGC 9 cut(s) 115, 552, 834, 1050, 1534, 1971, 2253, 2469, 2859
CspAI ACCGGT 2 cut(s) 1079, 2498
CviAII CATG 8 cut(s) 424, 434, 517, 1200, 1843, 1853, 1936, 2619
DraIII CACNNNGTG 2 cut(s) 679, 2098
EaeI YGGCCR 2 cut(s) 790, 2209
Eam1104I CTCTTC 1 cut(s) 3102
EarI CTCTTC 1 cut(s) 3102
Eco147I AGGCCT 1 cut(s) 2885
Eco24I GRGCYC 4 cut(s) 764, 1109, 2183, 2528
Eco31I GGTCTC 2 cut(s) 1082, 2501
Eco32I GATATC 4 cut(s) 214, 903, 1633, 2322
Eco57I CTGAAG 5 cut(s) 398, 732, 1817, 2151, 2954
Eco88I CYCGRG 2 cut(s) 1382, 2801
EcoO109I RGGNCCY 4 cut(s) 760, 761, 2179, 2180
EcoRI GAATTC 1 cut(s) 3235
EcoRII CCWGG 6 cut(s) 796, 1011, 1047, 2215, 2430, 2466
EcoRV GATATC 4 cut(s) 214, 903, 1633, 2322
EcoT38I GRGCYC 4 cut(s) 764, 1109, 2183, 2528
FaeI CATG 8 cut(s) 427, 437, 520, 1203, 1846, 1856, 1939, 2622
FaqI GGGAC 6 cut(s) 229, 537, 1291, 1648, 1956, 2710
FatI CATG 8 cut(s) 423, 433, 516, 1199, 1842, 1852, 1935, 2618
FauI CCCGC 4 cut(s) 514, 1242, 1933, 2661
FbaI TGATCA 1 cut(s) 3058
FblI GTMKAC 4 cut(s) 1287, 2706, 3033, 3075
FokI GGATG 4 cut(s) 37, 1399, 1456, 2818
FriOI GRGCYC 4 cut(s) 764, 1109, 2183, 2528
GlaI GCGC 1 cut(s) 2854
GsuI CTGGAG 4 cut(s) 374, 1302, 1793, 2721
HgaI GACGC 9 cut(s) 115, 552, 834, 1050, 1534, 1971, 2253, 2469, 2859
HhaI GCGC 1 cut(s) 2855
Hin1II CATG 8 cut(s) 427, 437, 520, 1203, 1846, 1856, 1939, 2622
Hin6I GCGC 1 cut(s) 2853
HinP1I GCGC 1 cut(s) 2853
HincII GTYRAC 2 cut(s) 829, 2248
HindII GTYRAC 2 cut(s) 829, 2248
HindIII AAGCTT 2 cut(s) 131, 1550
HpaI GTTAAC 2 cut(s) 829, 2248
Hpy99I CGWCG 4 cut(s) 546, 1965, 2853, 3050
HpyAV CCTTC 6 cut(s) 373, 460, 1792, 1879, 2896, 2929
HpyCH4III ACNGT 8 cut(s) 295, 313, 578, 1034, 1714, 1732, 1997, 2453
HpyCH4IV ACGT 9 cut(s) 471, 634, 1057, 1890, 2053, 2476, 3003, 3021, 3048
HpySE526I ACGT 9 cut(s) 471, 634, 1057, 1890, 2053, 2476, 3003, 3021, 3048
Hsp92II CATG 8 cut(s) 427, 437, 520, 1203, 1846, 1856, 1939, 2622
HspAI GCGC 1 cut(s) 2853
Ksp22I TGATCA 1 cut(s) 3058
KspAI GTTAAC 2 cut(s) 829, 2248
Lsp1109I GCAGC 7 cut(s) 41, 607, 803, 1460, 2026, 2222, 2971
LweI GCATC 5 cut(s) 1187, 1410, 2606, 3139, 3212
MaeII ACGT 9 cut(s) 471, 634, 1057, 1890, 2053, 2476, 3003, 3021, 3048
MfeI CAATTG 2 cut(s) 1353, 2772
MflI RGATCY 4 cut(s) 204, 743, 1623, 2162
MhlI GDGCHC 7 cut(s) 684, 764, 1109, 2103, 2183, 2528, 2833
MlsI TGGCCA 2 cut(s) 792, 2211
MluCI AATT 8 cut(s) 1353, 1377, 1402, 2772, 2796, 3179, 3235, 3261
MluNI TGGCCA 2 cut(s) 792, 2211
MmeI TCCRAC 1 cut(s) 3036
Mox20I TGGCCA 2 cut(s) 792, 2211
MscI TGGCCA 2 cut(s) 792, 2211
MslI CAYNNNNRTG 2 cut(s) 438, 1857
Msp20I TGGCCA 2 cut(s) 792, 2211
MspA1I CMGCKG 2 cut(s) 964, 2383
MspCI CTTAAG 4 cut(s) 217, 464, 1636, 1883
MunI CAATTG 2 cut(s) 1353, 2772
Mva1269I GAATGC 5 cut(s) 44, 1075, 1463, 2494, 3118
MvaI CCWGG 6 cut(s) 798, 1013, 1049, 2217, 2432, 2468
MvnI CGCG 3 cut(s) 546, 1965, 2853
NciI CCSGG 4 cut(s) 68, 80, 1487, 1499
NlaIII CATG 8 cut(s) 427, 437, 520, 1203, 1846, 1856, 1939, 2622
NlaIV GGNNCC 6 cut(s) 761, 762, 1114, 2180, 2181, 2533
NmuCI GTSAC 6 cut(s) 103, 885, 1212, 1522, 2304, 2631
NspV TTCGAA 3 cut(s) 48, 1467, 2889
PagI TCATGA 2 cut(s) 433, 1852
PceI AGGCCT 1 cut(s) 2885
PcsI WCGNNNNNNNCGW 6 cut(s) 489, 1248, 1908, 2667, 2857, 3042
PctI GAATGC 5 cut(s) 44, 1075, 1463, 2494, 3118
Pfl23II CGTACG 1 cut(s) 2857
PflFI GACNNNGTC 2 cut(s) 1292, 2711
PflMI CCANNNNNTGG 2 cut(s) 635, 2054
PinAI ACCGGT 2 cut(s) 1079, 2498
Ple19I CGATCG 1 cut(s) 2848
Ppu21I YACGTR 3 cut(s) 472, 1891, 3022
PsiI TTATAA 1 cut(s) 3161
Psp6I CCWGG 6 cut(s) 796, 1011, 1047, 2215, 2430, 2466
PspGI CCWGG 6 cut(s) 796, 1011, 1047, 2215, 2430, 2466
PspLI CGTACG 1 cut(s) 2857
PspN4I GGNNCC 6 cut(s) 761, 762, 1114, 2180, 2181, 2533
PspOMI GGGCCC 2 cut(s) 760, 2179
PspPI GGNCC 4 cut(s) 760, 761, 2179, 2180
PsrI GAACNNNNNNTAC 2 cut(s) 2898, 2930
PstI CTGCAG 1 cut(s) 2989
PstNI CAGNNNCTG 2 cut(s) 964, 2383
PsuI RGATCY 4 cut(s) 204, 743, 1623, 2162
PsyI GACNNNGTC 2 cut(s) 1292, 2711
PvuI CGATCG 1 cut(s) 2848
RseI CAYNNNNRTG 2 cut(s) 438, 1857
Sau96I GGNCC 4 cut(s) 760, 761, 2179, 2180
SduI GDGCHC 7 cut(s) 684, 764, 1109, 2103, 2183, 2528, 2833
SfaNI GCATC 5 cut(s) 1187, 1410, 2606, 3139, 3212
SfcI CTRYAG 7 cut(s) 574, 585, 1297, 1993, 2004, 2716, 2985
SfuI TTCGAA 3 cut(s) 48, 1467, 2889
SgrAI CRCCGGYG 2 cut(s) 1079, 2498
SmiMI CAYNNNNRTG 2 cut(s) 438, 1857
SmlI CTYRAG 6 cut(s) 217, 464, 568, 1636, 1883, 1987
SmoI CTYRAG 6 cut(s) 217, 464, 568, 1636, 1883, 1987
Sse9I AATT 8 cut(s) 1353, 1377, 1402, 2772, 2796, 3179, 3235, 3261
SseBI AGGCCT 1 cut(s) 2885
StuI AGGCCT 1 cut(s) 2885
TaaI ACNGT 8 cut(s) 295, 313, 578, 1034, 1714, 1732, 1997, 2453
TaiI ACGT 9 cut(s) 474, 637, 1060, 1893, 2056, 2479, 3006, 3024, 3051
TasI AATT 8 cut(s) 1353, 1377, 1402, 2772, 2796, 3179, 3235, 3261
TatI WGTACW 3 cut(s) 253, 1672, 2823
TauI GCSGC 8 cut(s) 7, 593, 596, 964, 1426, 2012, 2015, 2383
TseFI GTSAC 6 cut(s) 103, 885, 1212, 1522, 2304, 2631
TseI GCWGC 7 cut(s) 29, 620, 816, 1448, 2039, 2235, 2984
Tsp45I GTSAC 6 cut(s) 103, 885, 1212, 1522, 2304, 2631
Tth111I GACNNNGTC 2 cut(s) 1292, 2711
Van91I CCANNNNNTGG 2 cut(s) 635, 2054
Vha464I CTTAAG 4 cut(s) 217, 464, 1636, 1883
VneI GTGCAC 2 cut(s) 680, 2099
XapI RAATTY 1 cut(s) 3235
XcmI CCANNNNNNNNNTGG 6 cut(s) 1055, 1099, 1316, 2474, 2518, 2735
XmaJI CCTAGG 4 cut(s) 20, 55, 1439, 1474
XmiI GTMKAC 4 cut(s) 1287, 2706, 3033, 3075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.