Rw7G020880

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000414
Physical Location & Seq
Forward (+)
23969423 .. 23970025
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020880.1

Sequence Viewer

Length: 411 bp
ATGGATAATTCATTGGGTACTACAGACATTGATATTGAGAATTCTGATTTGGAGTTGGATTGGAAACCTAGAAAAGGAATGGAGTTTGATTCTGAACAAGCAGCTTATGACTTCTACAATAGATATGGAGGAAAAAAGGGGTTTAGTATTAGAAGGGAGACTCATGAGCACAATCATCCTCTTGTGGGGAAAGAATGTTCCCACATGCTACCTTCACAACGGAAAGTACAAGACTCTCAAGGCATTGACATAGACTTAGCACACGATTCTGGAATTGGTGTGACTTCTCTATATGAATTGATGGGTAAGCAAGCAGGTGGAAGAGATGATGTTGGGTATACAAAACAGGATGTAAAAAACTACCTTCGATCAAGGAGACAGAGAAGCTTGGAGTATGGAGAAGCTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

5.51

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 2 cut(s) 19, 228
AfiI CCNNNNNNNGG 2 cut(s) 74, 185
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 3 cut(s) 104, 387, 404
AluI AGCT 3 cut(s) 104, 387, 404
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 152, 370
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 152, 370
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 185
BseGI GGATG 2 cut(s) 175, 355
BseLI CCNNNNNNNGG 2 cut(s) 74, 185
BseXI GCAGC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 74, 185
BsmAI GTCTC 2 cut(s) 152, 370
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 368
BspHI TCATGA 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 305
BssMI GATC 1 cut(s) 368
BssNAI GTATAC 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 175, 355
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 2 cut(s) 152, 370
BstMBI GATC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 175, 355
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 163
Csp6I GTAC 2 cut(s) 18, 227
CviAII CATG 2 cut(s) 164, 205
CviJI RGCY 3 cut(s) 104, 387, 404
CviKI_1 RGCY 3 cut(s) 104, 387, 404
CviQI GTAC 2 cut(s) 18, 227
DdeI CTNAG 1 cut(s) 256
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 40
FaeI CATG 2 cut(s) 167, 208
FaiI YATR 9 cut(s) 108, 126, 165, 206, 251, 292, 294, 339, 396
FatI CATG 2 cut(s) 163, 204
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 162, 362
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 167, 208
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 4 cut(s) 89, 160, 233, 266
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 2 cut(s) 46, 94
Hpy188III TCNNGA 2 cut(s) 164, 270
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 3 cut(s) 147, 222, 374
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 2 cut(s) 167, 208
Kzo9I GATC 1 cut(s) 368
LpnPI CCDG 4 cut(s) 255, 300, 332, 390
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 7, 40, 273, 296
MlyI GAGTC 2 cut(s) 154, 227
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 122, 189
NdeII GATC 1 cut(s) 368
NlaIII CATG 2 cut(s) 167, 208
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 1 cut(s) 208
PagI TCATGA 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 305
PfeI GAWTC 2 cut(s) 89, 266
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 154, 227
PpsI GAGTC 2 cut(s) 154, 227
RsaI GTAC 2 cut(s) 19, 228
RsaNI GTAC 2 cut(s) 18, 227
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 368
SchI GAGTC 2 cut(s) 154, 227
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 70, 106, 214, 319, 366, 389, 406
SfcI CTRYAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 4 cut(s) 7, 40, 273, 296
SspMI CTAG 1 cut(s) 69
TaqI TCGA 1 cut(s) 367
TasI AATT 4 cut(s) 7, 40, 273, 296
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 2 cut(s) 89, 266
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 40
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.