Rw4G000900

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
1793625 .. 1797619
3995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000900.1

Sequence Viewer

Length: 1887 bp
ATGGAGTTTGATTCTGAACAAGCAGCTTATGACTTCTACAATAGATATGGAGGAAAAGAGGGGTTTAGTATTAGAAGGGAGAGTCATGCTAAGAACAAGAAAACCGGTGAAATCACTTCAAGAGTATTTGTTTGCTGTAAGGAAGGTATTCGATCTAAAGATAAGAGGGAATACATGATTAGAAAATCCAGAGCAGAGACACGTACAGGTTGCCATGCTGAACTTTGTATTAAATTGAATAGGGAGAACAATAAGTTCTTTGTTACCCATTTTGTTGAAGAGCACAATCATCCTCTTGTGGTGAAAGAATGTTCTCACATGCTTCCTTCGCAACGGAAAGTACAAGACTGTCAAAGCATTGATATAGACTTAGCACACGATTCTGGAATTGGTGTCACGTCTCTATATGAGTTGATGGGTAAGCAAGCCGGTGGAAGAGATGCTGTGGGGTATACAAAACAAGATGTGAAAAATTACCTTAGATCAAAGAGACAAAGAAGCTTGGAGTATGGAGAAGCTGGATATATTATGAAATATTTTTCAGACCAAACATTGGAAAACCCTTCATTCTACCATGCTATGCAATTAGACAGTGAGGAGCAAATAACAAACTTATTTTGGGCAGATGCTAAAATGATCATTGATTATGGCCAATTTGGGGATGTTCATGGGAGTAGTTTTTTGACAGAGGATGGTGAAATCACAAGTATTTTGTCAAGGTTCATGGAAAATATTGAGGAGGAAGATGAGTTTATATCTGCTTGGGATGCTATGCTTGATCAATATGGTGCACGTGACAATACTTGGCTGAGTAGCATATATGATTTAAGAGAAAAGTGGGGCTTTCCGTATGTTAAGCGAGCATGGTCAGCTGGAATAAGAAGCACTCAACTAAGTGAGAGTTTTAACTCTGCCTTGAAAAAATATTTAGACTCTGACCACAATCTGTCAGAGTTTTTTACACACTATGAGAGGATGGTTGCTGATAAAAGGTACAAGGAGTTACAAGCAGAATATGATATGTGCTTCAGGTTGCCTATTCTGAAAATGCAAGTCAAAATGCTATATGAAGCAAGAAAAGTTTACACTAAACTAATATTTGAAGAGTTTCAAGATCAATTTGAATCGTCTCTTGAAGCTTCTATAACAGATTGTGTTGATGTTGATAGTGAAAAGATATATACTGTGATTAGAGATGGCTACTCTAGAGAACGGCAAGTGAAGAGAGATAGTGATGATATACTCTCTTGTAGTTGCAGATTATTTGAGATGAAAGGGGTTGTATGTAGGCACATTATCAAGGTCCTTAGAGAAGTGATGCAAGTCAAAGAAATTCCTGAGCATTATATCTTAAAAAGATGGACCAAAAAAGCTCGAGCTGAAAGTGTTCAAGACATGCATGGGCGTGAAATTCAACCCGACCCTAAGTTGCAACAAGCCTCTTGGTACAGATCTTTATGTTCCACCTACATTAGAATATCAAGCAAGGCTTCTGAAAATGAAAAAGCATACAAATTAGTCATGACAAATGCAGAGAAGTTAGCAAAAGAAGTTGAAGAATTGCTACGATCTGAAATGAATGCTAATGTGGATGAGAATGGTCATACAACTCAATCCACTCCTACTGGACAACTCAATGTAGATGGTAATGTGGTGAATGCAAAAGGGCTAAAGAAGAAGGAAACATCTAAAGGAAGAAAACGGAGAATCAAGAGTCAAGTAGAGATAAGCATGAACCAAAATAAAAAACAGAGGCAACCCAAGCACTTTATTGGGGTAAATTATTTTGTACTGATTCCTTTCCATGAAGTGCACTTTCTTGTCATCGTAAACTCTGCAAACCTTACAAGTTGGTTTCCCAAAAGAATTCTGCATTACACAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

628

Amino Acids

73.35

Weight (kDa)

8.08

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 11 - 100 3.5e-24 FAR1 DNA-binding domain
SWIM PF04434 415 - 437 1e-05 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 553
AccI GTMKAC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 3 cut(s) 1332, 1410, 1866
AcuI CTGAAG 1 cut(s) 1012
AcvI CACGTG 1 cut(s) 794
AfaI GTAC 5 cut(s) 205, 342, 995, 1448, 1791
AfiI CCNNNNNNNGG 2 cut(s) 553, 658
AflIII ACRYGT 1 cut(s) 200
AgeI ACCGGT 1 cut(s) 104
AjiI CACGTC 1 cut(s) 399
AluBI AGCT 7 cut(s) 26, 501, 518, 872, 1139, 1373, 1379
AluI AGCT 7 cut(s) 26, 501, 518, 872, 1139, 1373, 1379
Alw21I GWGCWC 3 cut(s) 285, 793, 1815
Alw26I GTCTC 4 cut(s) 191, 405, 484, 1134
Alw44I GTGCAC 2 cut(s) 789, 1811
Ama87I CYCGRG 1 cut(s) 1374
AoxI GGCC 1 cut(s) 649
ApaLI GTGCAC 2 cut(s) 789, 1811
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 1332, 1410, 1866
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 3 cut(s) 147, 1107, 1386
AspS9I GGNCC 2 cut(s) 1303, 1362
AsuHPI GGTGA 4 cut(s) 119, 313, 707, 1666
AvaI CYCGRG 1 cut(s) 1374
AvaII GGWCC 2 cut(s) 1303, 1362
BaeGI GKGCMC 2 cut(s) 793, 1815
BalI TGGCCA 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 1548, 1580
BbrPI CACGTG 1 cut(s) 794
Bbv12I GWGCWC 3 cut(s) 285, 793, 1815
BbvI GCAGC 1 cut(s) 35
BccI CCATC 6 cut(s) 409, 686, 970, 1190, 1353, 1637
BceAI ACGGC 1 cut(s) 1229
BclI TGATCA 2 cut(s) 636, 778
BcoDI GTCTC 4 cut(s) 191, 405, 484, 1134
BfaI CTAG 1 cut(s) 1206
BglII AGATCT 1 cut(s) 1451
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme18I GGWCC 2 cut(s) 1303, 1362
BmeT110I CYCGRG 1 cut(s) 1374
BmgBI CACGTC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 1303, 1362
BmsI GCATC 4 cut(s) 430, 616, 757, 1308
Bpu10I CCTNAGC 1 cut(s) 1338
BsaAI YACGTR 2 cut(s) 203, 794
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 553, 658
Bse118I RCCGGY 2 cut(s) 104, 428
Bse1I ACTGG 1 cut(s) 1630
BseGI GGATG 6 cut(s) 289, 667, 697, 772, 981, 1597
BseLI CCNNNNNNNGG 2 cut(s) 553, 658
BseMII CTCAG 2 cut(s) 800, 1329
BseNI ACTGG 1 cut(s) 1630
BseRI GAGGAG 2 cut(s) 611, 752
BseSI GKGCMC 2 cut(s) 793, 1815
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 651
BshTI ACCGGT 1 cut(s) 104
BsiHKAI GWGCWC 3 cut(s) 285, 793, 1815
BsiHKCI CYCGRG 1 cut(s) 1374
BsiSI CCGG 2 cut(s) 105, 429
BslI CCNNNNNNNGG 2 cut(s) 553, 658
BsmAI GTCTC 4 cut(s) 191, 405, 484, 1134
BsmBI CGTCTC 2 cut(s) 405, 1134
BsmI GAATGC 2 cut(s) 1585, 1663
BsnI GGCC 1 cut(s) 651
BsoBI CYCGRG 1 cut(s) 1374
Bsp1286I GDGCHC 3 cut(s) 285, 793, 1815
Bsp143I GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
BspANI GGCC 1 cut(s) 651
BspCNI CTCAG 2 cut(s) 801, 1330
BspHI TCATGA 1 cut(s) 1521
BspQI GCTCTTC 1 cut(s) 273
BsrFI RCCGGY 2 cut(s) 104, 428
BsrI ACTGG 1 cut(s) 1630
BssAI RCCGGY 2 cut(s) 104, 428
BssMI GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
BssNAI GTATAC 1 cut(s) 453
Bst1107I GTATAC 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 350, 593, 1186
Bst6I CTCTTC 4 cut(s) 273, 430, 1098, 1217
BstBAI YACGTR 2 cut(s) 203, 794
BstC8I GCNNGC 2 cut(s) 426, 861
BstDEI CTNAG 8 cut(s) 90, 370, 479, 809, 893, 1307, 1338, 1425
BstF5I GGATG 6 cut(s) 289, 667, 697, 772, 981, 1597
BstKTI GATC 7 cut(s) 155, 485, 639, 781, 1117, 1454, 1571
BstMAI GTCTC 4 cut(s) 191, 405, 484, 1134
BstMBI GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
BstMWI GCNNNNNNNGC 4 cut(s) 328, 767, 869, 1762
BstNSI RCATGY 2 cut(s) 322, 1399
BstSLI GKGCMC 2 cut(s) 793, 1815
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 1451
BstYI RGATCY 1 cut(s) 1451
BstZ17I GTATAC 1 cut(s) 453
BsuRI GGCC 1 cut(s) 651
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 6 cut(s) 289, 667, 697, 772, 981, 1597
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 426, 861
CciI TCATGA 1 cut(s) 1521
Cfr10I RCCGGY 2 cut(s) 104, 428
Cfr13I GGNCC 2 cut(s) 1303, 1362
Csp6I GTAC 5 cut(s) 204, 341, 994, 1447, 1790
CspAI ACCGGT 1 cut(s) 104
CviQI GTAC 5 cut(s) 204, 341, 994, 1447, 1790
DdeI CTNAG 8 cut(s) 90, 370, 479, 809, 893, 1307, 1338, 1425
DpnI GATC 7 cut(s) 154, 484, 638, 780, 1116, 1453, 1570
DpnII GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 4 cut(s) 273, 430, 1098, 1217
EarI CTCTTC 4 cut(s) 273, 430, 1098, 1217
Eco47I GGWCC 2 cut(s) 1303, 1362
Eco57I CTGAAG 1 cut(s) 1012
Eco72I CACGTG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 1374
EcoO109I RGGNCCY 1 cut(s) 1303
EcoRI GAATTC 1 cut(s) 1866
EcoT22I ATGCAT 1 cut(s) 1401
Esp3I CGTCTC 2 cut(s) 405, 1134
FalI AAGNNNNNCTT 4 cut(s) 827, 859, 1474, 1506
FbaI TGATCA 2 cut(s) 636, 778
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 6 cut(s) 276, 674, 704, 779, 988, 1604
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 1206
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 651
HapII CCGG 2 cut(s) 105, 429
HindIII AAGCTT 2 cut(s) 499, 1137
HinfI GANTC 8 cut(s) 11, 82, 380, 932, 1124, 1707, 1714, 1795
HpaII CCGG 2 cut(s) 105, 429
HphI GGTGA 4 cut(s) 119, 313, 707, 1666
Hpy166II GTNNAC 5 cut(s) 453, 791, 1084, 1813, 1831
Hpy188I TCNGA 7 cut(s) 16, 544, 937, 952, 1044, 1495, 1573
Hpy8I GTNNAC 5 cut(s) 453, 791, 1084, 1813, 1831
HpyAV CCTTC 5 cut(s) 69, 137, 336, 573, 1672
HpyCH4III ACNGT 3 cut(s) 350, 593, 1186
HpyCH4IV ACGT 3 cut(s) 202, 398, 793
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 767, 869, 1762
HpyF3I CTNAG 8 cut(s) 90, 370, 479, 809, 893, 1307, 1338, 1425
HpySE526I ACGT 3 cut(s) 202, 398, 793
Ksp22I TGATCA 2 cut(s) 636, 778
Kzo9I GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 4 cut(s) 430, 616, 757, 1308
MaeI CTAG 1 cut(s) 1206
MaeII ACGT 3 cut(s) 202, 398, 793
MaeIII GTNAC 4 cut(s) 262, 394, 794, 1002
MalI GATC 7 cut(s) 154, 484, 638, 780, 1116, 1453, 1570
MboI GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
MboII GAAGA 8 cut(s) 290, 447, 755, 1115, 1234, 1568, 1687, 1707
MflI RGATCY 1 cut(s) 1451
MhlI GDGCHC 3 cut(s) 285, 793, 1815
MlsI TGGCCA 1 cut(s) 651
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 3 cut(s) 91, 926, 1723
Mox20I TGGCCA 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 1401
MroXI GAANNNNTTC 3 cut(s) 147, 1107, 1386
MscI TGGCCA 1 cut(s) 651
MseI TTAA 5 cut(s) 231, 827, 855, 906, 1352
MslI CAYNNNNRTG 1 cut(s) 1404
Msp20I TGGCCA 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 872
MspI CCGG 2 cut(s) 105, 429
Mva1269I GAATGC 2 cut(s) 1585, 1663
MwoI GCNNNNNNNGC 4 cut(s) 328, 767, 869, 1762
NdeII GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
NmuCI GTSAC 2 cut(s) 394, 794
NsiI ATGCAT 1 cut(s) 1401
NspI RCATGY 2 cut(s) 322, 1399
PaeR7I CTCGAG 1 cut(s) 1374
PagI TCATGA 1 cut(s) 1521
PciSI GCTCTTC 1 cut(s) 273
PctI GAATGC 2 cut(s) 1585, 1663
PdmI GAANNNNTTC 3 cut(s) 147, 1107, 1386
PfeI GAWTC 5 cut(s) 11, 380, 1124, 1707, 1795
PflMI CCANNNNNTGG 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 3 cut(s) 90, 926, 1722
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 3 cut(s) 90, 926, 1722
Ppu21I YACGTR 2 cut(s) 203, 794
PpuMI RGGWCCY 1 cut(s) 1303
Psp5II RGGWCCY 1 cut(s) 1303
PspCI CACGTG 1 cut(s) 794
PspPI GGNCC 2 cut(s) 1303, 1362
PspPPI RGGWCCY 1 cut(s) 1303
PspXI VCTCGAGB 1 cut(s) 1374
PsuI RGATCY 1 cut(s) 1451
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 5 cut(s) 205, 342, 995, 1448, 1791
RsaNI GTAC 5 cut(s) 204, 341, 994, 1447, 1790
RseI CAYNNNNRTG 1 cut(s) 1404
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 5 cut(s) 231, 827, 855, 906, 1352
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 7 cut(s) 152, 482, 636, 778, 1114, 1451, 1568
Sau96I GGNCC 2 cut(s) 1303, 1362
SchI GAGTC 3 cut(s) 91, 926, 1723
SduI GDGCHC 3 cut(s) 285, 793, 1815
SfaNI GCATC 4 cut(s) 430, 616, 757, 1308
Sfr274I CTCGAG 1 cut(s) 1374
SinI GGWCC 2 cut(s) 1303, 1362
SlaI CTCGAG 1 cut(s) 1374
SmiMI CAYNNNNRTG 1 cut(s) 1404
SmlI CTYRAG 1 cut(s) 1374
SmoI CTYRAG 1 cut(s) 1374
SspI AATATT 4 cut(s) 536, 733, 926, 1098
SspMI CTAG 1 cut(s) 1206
TaaI ACNGT 3 cut(s) 350, 593, 1186
TaiI ACGT 3 cut(s) 205, 401, 796
TaqI TCGA 2 cut(s) 151, 1375
TatI WGTACW 2 cut(s) 340, 1789
TfiI GAWTC 5 cut(s) 11, 380, 1124, 1707, 1795
Tru1I TTAA 5 cut(s) 231, 827, 855, 906, 1352
Tru9I TTAA 5 cut(s) 231, 827, 855, 906, 1352
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 2 cut(s) 394, 794
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 394, 794
TspGWI ACGGA 3 cut(s) 349, 837, 1717
TspRI CASTG 1 cut(s) 598
Van91I CCANNNNNTGG 1 cut(s) 553
VneI GTGCAC 2 cut(s) 789, 1811
VpaK11BI GGWCC 2 cut(s) 1303, 1362
XapI RAATTY 3 cut(s) 1332, 1410, 1866
XbaI TCTAGA 1 cut(s) 1205
XceI RCATGY 2 cut(s) 322, 1399
XhoI CTCGAG 1 cut(s) 1374
XmiI GTMKAC 1 cut(s) 452
XmnI GAANNNNTTC 3 cut(s) 147, 1107, 1386
XspI CTAG 1 cut(s) 1206
Zsp2I ATGCAT 1 cut(s) 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.