Rroxscaffold_7G00192220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000414
Physical Location & Seq
Reverse (-)
33337538 .. 33341286
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192220.1

Sequence Viewer

Length: 435 bp
ATGCTTGAAAACCTTCGGAACTTCGGAAGTTTGGAGCTCCGACTCTCATTCCTTGTTAGGATATGGGACAAACCAAGAGCTGAGAGAGGGAGATCTAATCAAAAGTTCAAAACTTTAGCTTTGTGTCTTCTCACTTTCTCCTGCATTCCATTGCCAGAGGTAACTCCTGATGCAATGAATAATGTATACAAGGTGACTATTGATCCACTATGTGATGAAGAGAATATTGCTACTGATCTAACAAGTAATGCAGACCAATTTCTGGAACAAGATATATCTGCATCTTCACTTAGATTTCTTGCTTGTAGTCAGAAGAGTTGCAGGCTTTTGTTTTGTTTTTATAAGAAATGGAAAGGGAAATTGTGCAGTGCAGGCTTCTGTACAGTTTTTGTAAAGATTGGAGAAGGCAATTGTGCAGTGCAGGCTTCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

8.38

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 262
AccI GTMKAC 1 cut(s) 186
AclWI GGATC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 8, 109
AluBI AGCT 3 cut(s) 37, 80, 119
AluI AGCT 3 cut(s) 37, 80, 119
Alw21I GWGCWC 1 cut(s) 39
AlwI GGATC 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 205
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 39
BglII AGATCT 1 cut(s) 92
BmsI GCATC 2 cut(s) 160, 290
BpiI GAAGAC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 149, 180
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 2 cut(s) 149, 180
BseMII CTCAG 1 cut(s) 72
BsgI GTGCAG 3 cut(s) 385, 390, 435
BsiHKAI GWGCWC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 380
Bsp143I GATC 3 cut(s) 92, 202, 235
BspCNI CTCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 149, 180
BsrGI TGTACA 1 cut(s) 380
BssMI GATC 3 cut(s) 92, 202, 235
BssNAI GTATAC 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 2 cut(s) 213, 308
BstAUI TGTACA 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 323, 373, 423
BstDEI CTNAG 2 cut(s) 81, 290
BstKTI GATC 3 cut(s) 95, 205, 238
BstMBI GATC 3 cut(s) 92, 202, 235
BstMWI GCNNNNNNNGC 2 cut(s) 372, 422
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 187
BtsI GCAGTG 2 cut(s) 373, 423
BtsIMutI CAGTG 2 cut(s) 373, 423
Cac8I GCNNGC 3 cut(s) 323, 373, 423
Csp6I GTAC 1 cut(s) 381
CviJI RGCY 6 cut(s) 37, 80, 119, 325, 375, 425
CviKI_1 RGCY 6 cut(s) 37, 80, 119, 325, 375, 425
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 2 cut(s) 81, 290
DpnI GATC 3 cut(s) 94, 204, 237
DpnII GATC 3 cut(s) 92, 202, 235
DraIII CACNNNGTG 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 213, 308
EarI CTCTTC 2 cut(s) 213, 308
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
FaiI YATR 6 cut(s) 64, 187, 211, 275, 342, 433
FaqI GGGAC 1 cut(s) 80
FblI GTMKAC 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 39
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 4 cut(s) 18, 26, 41, 312
Hpy188III TCNNGA 2 cut(s) 167, 263
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 23, 398
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 9 cut(s) 144, 173, 251, 281, 321, 366, 371, 416, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 372, 422
HpyF3I CTNAG 2 cut(s) 81, 290
Kzo9I GATC 3 cut(s) 92, 202, 235
LmnI GCTCC 2 cut(s) 34, 42
LpnPI CCDG 7 cut(s) 154, 168, 180, 248, 307, 357, 407
LweI GCATC 2 cut(s) 160, 290
MaeIII GTNAC 2 cut(s) 160, 193
MalI GATC 3 cut(s) 94, 204, 237
MboI GATC 3 cut(s) 92, 202, 235
MboII GAAGA 4 cut(s) 119, 230, 276, 325
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 3 cut(s) 257, 359, 409
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 80, 151
MroXI GAANNNNTTC 1 cut(s) 12
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 372, 422
NdeII GATC 3 cut(s) 92, 202, 235
NmuCI GTSAC 1 cut(s) 193
PctI GAATGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 262
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SacI GAGCTC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 92, 202, 235
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 39
SetI ASST 6 cut(s) 15, 39, 82, 121, 162, 195
SfaNI GCATC 2 cut(s) 160, 290
Sse9I AATT 3 cut(s) 257, 359, 409
SspI AATATT 1 cut(s) 226
SstI GAGCTC 1 cut(s) 39
TaaI ACNGT 1 cut(s) 385
TasI AATT 3 cut(s) 257, 359, 409
TatI WGTACW 1 cut(s) 380
TscAI CASTG 2 cut(s) 373, 423
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 191, 231
TspRI CASTG 2 cut(s) 373, 423
Van91I CCANNNNNTGG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.