Rmu_sc0004873.1_g000001

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004873.1
OG0000414
Physical Location & Seq
Reverse (-)
1677 .. 2408
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004873.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atgcatagcacccaattaagtgagagtttcaatgctagactaaaaccatatgttaagtcagactatgatgtggttcagtttttcaagcattttgatagattgctcaatgataagcggtataaagagttagaggccgagtatgctttgtactacaagttacctgctattgggatattttcttcaatgattcagtatgagaaggctcttgattacaacttagtcggatgtattcaagatggtgatgccattgtgtataaagttgcctttaatcatcatctaaagaagagatgtgttagggtgaagaaagaccagtctgtatcatgtagttgcaggttgtttgagattgaatgtattatgtgccgccatgcaataaaaatccttacaaactacatgaatgtcaaagaaattcctgatcagtatattctaaaaagatggacaagaaaagcaagattagaaagagtgaaagacatgtatggccaagacatccaagtagataccaacctacaacaaacatcttggtacaagtctctaagttccatatcgaccaagattttaactcgggccgctgagagagaagagacatttaagtttgctgttcagaaattgagagaactaagcaaagctattgaagacatgttatgttcaaaaatggatacattacatcttggtaaggatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

226

Amino Acids

26.7

Weight (kDa)

9.01

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 169, 321
AciI CCGC 3 cut(s) 115, 361, 564
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 1 cut(s) 405
AfaI GTAC 2 cut(s) 149, 521
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 2 cut(s) 468, 633
AgsI TTSAA 7 cut(s) 31, 85, 183, 233, 347, 629, 645
AluBI AGCT 1 cut(s) 623
AluI AGCT 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 531, 572
Ama87I CYCGRG 1 cut(s) 558
AoxI GGCC 3 cut(s) 132, 475, 561
ApoI RAATTY 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 251, 310
AvaI CYCGRG 1 cut(s) 558
BalI TGGCCA 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 636
BccI CCATC 2 cut(s) 230, 426
BciVI GTATCC 1 cut(s) 646
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 531, 572
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 2 cut(s) 169, 321
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 2 cut(s) 361, 564
BlsI GCNGC 2 cut(s) 362, 565
BmeT110I CYCGRG 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 561
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 636
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 310
BseGI GGATG 3 cut(s) 230, 483, 679
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 310
BshFI GGCC 3 cut(s) 134, 477, 563
BsiHKCI CYCGRG 1 cut(s) 558
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 531, 572
BsnI GGCC 3 cut(s) 134, 477, 563
BsoBI CYCGRG 1 cut(s) 558
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 3 cut(s) 115, 361, 564
BspANI GGCC 3 cut(s) 134, 477, 563
BspCNI CTCAG 1 cut(s) 559
BspMI ACCTGC 2 cut(s) 169, 321
BsrI ACTGG 1 cut(s) 310
BssMI GATC 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 278, 570
BstDEI CTNAG 4 cut(s) 217, 530, 567, 614
BstF5I GGATG 3 cut(s) 230, 483, 679
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 2 cut(s) 531, 572
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 2 cut(s) 472, 637
BstV2I GAAGAC 1 cut(s) 636
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 3 cut(s) 134, 477, 563
BtsCI GGATG 3 cut(s) 230, 483, 679
BveI ACCTGC 2 cut(s) 169, 321
Cfr13I GGNCC 1 cut(s) 561
Csp6I GTAC 2 cut(s) 148, 520
CviAII CATG 5 cut(s) 321, 365, 391, 469, 634
CviJI RGCY 5 cut(s) 134, 203, 477, 563, 623
CviKI_1 RGCY 5 cut(s) 134, 203, 477, 563, 623
CviQI GTAC 2 cut(s) 148, 520
DdeI CTNAG 4 cut(s) 217, 530, 567, 614
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 278, 570
EarI CTCTTC 2 cut(s) 278, 570
Eco88I CYCGRG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 5 cut(s) 324, 368, 394, 472, 637
FatI CATG 5 cut(s) 320, 364, 390, 468, 633
FauNDI CATATG 1 cut(s) 49
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 361, 564
FokI GGATG 2 cut(s) 237, 470
Fsp4HI GCNGC 2 cut(s) 361, 564
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 361, 564
HaeIII GGCC 3 cut(s) 134, 477, 563
Hin1II CATG 5 cut(s) 324, 368, 394, 472, 637
HinfI GANTC 1 cut(s) 187
HphI GGTGA 2 cut(s) 251, 310
Hpy188I TCNGA 3 cut(s) 61, 224, 600
Hpy188III TCNNGA 3 cut(s) 206, 233, 410
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 4, 330, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 4 cut(s) 217, 530, 567, 614
Hsp92II CATG 5 cut(s) 324, 368, 394, 472, 637
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 412
LpnPI CCDG 4 cut(s) 174, 316, 323, 423
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 156
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 5 cut(s) 171, 295, 313, 587, 641
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 3 cut(s) 14, 405, 602
MluNI TGGCCA 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 477
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 477
MseI TTAA 5 cut(s) 17, 54, 267, 554, 585
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 412
NlaIII CATG 5 cut(s) 324, 368, 394, 472, 637
NmeAIII GCCGAG 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 472, 637
PciI ACATGT 2 cut(s) 468, 633
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 2 cut(s) 362, 565
PscI ACATGT 2 cut(s) 468, 633
PspPI GGNCC 1 cut(s) 561
RsaI GTAC 2 cut(s) 149, 521
RsaNI GTAC 2 cut(s) 148, 520
SaqAI TTAA 5 cut(s) 17, 54, 267, 554, 585
SatI GCNGC 2 cut(s) 361, 564
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 561
SetI ASST 4 cut(s) 163, 335, 504, 625
SfaNI GCATC 1 cut(s) 232
Sse9I AATT 3 cut(s) 14, 405, 602
SsiI CCGC 3 cut(s) 115, 361, 564
SspMI CTAG 1 cut(s) 36
TaqI TCGA 1 cut(s) 542
TasI AATT 3 cut(s) 14, 405, 602
TatI WGTACW 1 cut(s) 147
TauI GCSGC 2 cut(s) 363, 566
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 5 cut(s) 17, 54, 267, 554, 585
Tru9I TTAA 5 cut(s) 17, 54, 267, 554, 585
TspDTI ATGAA 1 cut(s) 407
XapI RAATTY 1 cut(s) 405
XceI RCATGY 2 cut(s) 472, 637
XspI CTAG 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.