Rw6G043190

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
66555916 .. 66559275
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043190.1

Sequence Viewer

Length: 1803 bp
ATGGAAAATCGTCCATGGTTACAAGAAGGCATGAATACAATCAAGGCATCAATAAGTCTCTTGATTGATTGGATTCCTCGAATAGGTATGCAATTTGATACAGTAGATGCAGCATTTCAATTTTGGCTCAAGTACGGAGGTCGAACTGGTTTTGGGGTTCGAAAAGTGTATGCAAATAAGAGTCGAATAGATGGACAAATTACTACAATTAGATTTGTGTGCTCAAAAGAGGGTAATCGAGTAGCAGATACACTAGATCATCTAACAAAGAACCCTAGAGCAGATACAAGAACAAACTGTCTTGTACGATTGGGACTGCAATTCAATAGAGAAAGTAGCAAGTTTGAGTTTCATGATTTTGTACATGAGCATAATCATCTTCTGCATACTCCAGAAACGTGTCACATGATTCCATCTCAACGGAATCTAACAGATAGCCAAGCTATTCATATTGATTTTGCCGATGACTCTGGACTTAAACCAAAGGCTCGGCAAAAGGATATGGCATATGGAGAAGCAGGCAACCTCCTAAGATATTTACAAAATCAATCTTGTGAGAATCCCTCATTCCAATATGTTGTACAATTGGATAGTGAAGAACAGATTACAAATATATTTTGGGCAGATACAAGAATGATTATTGCTTATATTCATTTTGGTGATGTCATTACTTTCGACACCACATACAGTACTAATAAGGAATATAGGCCTTTTGGGGTATTTTCTGGGTTTAACCATCACAGAGAGACTGCACTATTTGAGGCTGCACTCCTTTATGATGAGACAGCTAAAGCACATAAGCAAAAAAAGCCAAAGACTATATTTACAGACCAAGATCCTGCAATGGCAAATGCATTGGCCGAGGTGCTTCCAGATACGTTTCATGGATTATGTAGTTGGCATATAATGCAAAATGGAATCAAGCATTTGGGATACCTGATGAAGGATGGCTCTTCTTTTCTTACAGATTTTAATTTGAAGATGCTTGGAATGCTATATATGCTATGCAAATATAATATTTGCAGCAATCCATGGTTGGAAAAGATATATGAAATTAAGGAGAAATGGGCTAAATCTTACTTAAAGTCAGACATGGATATCATGCGTTTTTTTAAACAGTTTGAAAGGGTCGCTAATGAAAAGCACTATAAGGAGCTAGAAGCTAAGTATAATTCTAGGCAAAAGTTACCAAGAGTGAAGGTACAAAAATCACCTGTACTACAACAAGTAGCGAAAATCTACACTCCATCAATCTTTGAAAAGTATTTCCAAGAAGAATTTGATTGGTCTTCAGGAGCTATTATAAAACAGCGTGAGGAATCTACTCATACACATAAGTATAGGATTGCCATTGTAGATGAAAAAAGAGAGCATAAGGAGCATAAGAGGTGGACTAGGGAGGCAAGAAATGAGGCTGTTGCAAGCATGAATCAAGCCAATGTGATGGAAGATAAGAAATTGACTATAGCTGAGCGATATAGAATAGCTTGCCCTATATTAGTTGATATTGCATCTCGAGCATCTGGAGATGAAAAAGCCTTTGAATTGGTTGAAGACATCTTCTTGGACAACTCAACAACGAGTATTGATGAACTGCATAATTCTTCGCATGGTGGGGGTGAGAGGATGGTTCAAGAAAGTCAAACTTCAGAAGGTCGCAAAAAACGCCCATCAAGAAAGAGAAATACAAGATCATCTAATAAGGATCAATCATTACCTCAAGCATCTCAGGATCAAGGAGCTCCACCATCAAGCAAAAGAAAGAAACAATTGTCTACTCGTTTAGTTGGTTATCATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

600

Amino Acids

69.61

Weight (kDa)

8.92

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 40 - 128 4.4e-17 FAR1 DNA-binding domain
MULE PF10551 222 - 305 2.9e-15 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1304
AccI GTMKAC 1 cut(s) 1775
AclWI GGATC 3 cut(s) 830, 1713, 1740
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 1 cut(s) 1277
AcuI CTGAAG 2 cut(s) 1275, 1632
AfaI GTAC 7 cut(s) 134, 306, 363, 582, 691, 1203, 1218
AfiI CCNNNNNNNGG 2 cut(s) 83, 943
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 8 cut(s) 119, 325, 979, 1124, 1259, 1544, 1553, 1634
AluBI AGCT 8 cut(s) 443, 788, 1156, 1163, 1298, 1469, 1487, 1742
AluI AGCT 8 cut(s) 443, 788, 1156, 1163, 1298, 1469, 1487, 1742
Alw21I GWGCWC 2 cut(s) 224, 1744
Alw26I GTCTC 3 cut(s) 62, 740, 776
AlwI GGATC 3 cut(s) 830, 1713, 1740
Ama87I CYCGRG 1 cut(s) 1515
AoxI GGCC 2 cut(s) 707, 858
ApeKI GCWGC 3 cut(s) 110, 764, 1023
ApoI RAATTY 1 cut(s) 1277
AsuHPI GGTGA 3 cut(s) 671, 1203, 1631
AsuII TTCGAA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 1515
BanII GRGCYC 1 cut(s) 1744
BbsI GAAGAC 2 cut(s) 1281, 1560
Bbv12I GWGCWC 2 cut(s) 224, 1744
BbvI GCAGC 3 cut(s) 122, 751, 1035
BccI CCATC 9 cut(s) 185, 421, 744, 941, 1255, 1438, 1621, 1678, 1756
BciVI GTATCC 1 cut(s) 926
BcoDI GTCTC 3 cut(s) 62, 740, 776
BfaI CTAG 5 cut(s) 254, 276, 1157, 1176, 1395
BfmI CTRYAG 1 cut(s) 1464
BfuI GTATCC 1 cut(s) 926
BisI GCNGC 3 cut(s) 111, 765, 1024
BlpI GCTNAGC 1 cut(s) 1470
BlsI GCNGC 3 cut(s) 112, 766, 1025
BmcAI AGTACT 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 1515
BmsI GCATC 6 cut(s) 56, 97, 972, 1520, 1529, 1733
BpiI GAAGAC 2 cut(s) 1281, 1560
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 2 cut(s) 375, 1545
Bpu1102I GCTNAGC 1 cut(s) 1470
Bpu14I TTCGAA 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 113, 1704
BsaJI CCNNGG 3 cut(s) 14, 861, 1031
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 943
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 849
BseDI CCNNGG 3 cut(s) 14, 861, 1031
BseGI GGATG 2 cut(s) 952, 1632
BseLI CCNNNNNNNGG 2 cut(s) 83, 943
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 2 cut(s) 1461, 1742
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 122, 751, 1035
BsgI GTGCAG 2 cut(s) 735, 750
BshFI GGCC 2 cut(s) 709, 860
BsiHKAI GWGCWC 2 cut(s) 224, 1744
BsiHKCI CYCGRG 1 cut(s) 1515
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 83, 943
BsmAI GTCTC 3 cut(s) 62, 740, 776
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 2 cut(s) 709, 860
BsoBI CYCGRG 1 cut(s) 1515
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 224, 1744
Bsp1407I TGTACA 2 cut(s) 361, 580
Bsp143I GATC 5 cut(s) 256, 835, 1691, 1705, 1732
Bsp1720I GCTNAGC 1 cut(s) 1470
Bsp19I CCATGG 2 cut(s) 14, 1031
BspANI GGCC 2 cut(s) 709, 860
BspCNI CTCAG 2 cut(s) 1462, 1741
BspHI TCATGA 1 cut(s) 352
BspPI GGATC 3 cut(s) 830, 1713, 1740
BspQI GCTCTTC 1 cut(s) 958
BspT104I TTCGAA 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 849
BsrGI TGTACA 2 cut(s) 361, 580
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 14, 861, 1031
BssMI GATC 5 cut(s) 256, 835, 1691, 1705, 1732
BssT1I CCWWGG 2 cut(s) 14, 1031
Bst4CI ACNGT 4 cut(s) 103, 299, 689, 1119
Bst6I CTCTTC 1 cut(s) 958
BstAPI GCANNNNNTGC 1 cut(s) 907
BstAUI TGTACA 2 cut(s) 361, 580
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 520, 1423, 1489
BstDEI CTNAG 4 cut(s) 530, 1164, 1470, 1728
BstDSI CCRYGG 2 cut(s) 14, 1031
BstENI CCTNNNNNAGG 2 cut(s) 81, 941
BstF5I GGATG 2 cut(s) 952, 1632
BstKTI GATC 5 cut(s) 259, 838, 1694, 1708, 1735
BstMAI GTCTC 3 cut(s) 62, 740, 776
BstMBI GATC 5 cut(s) 256, 835, 1691, 1705, 1732
BstMWI GCNNNNNNNGC 7 cut(s) 808, 907, 991, 1000, 1378, 1517, 1665
BstSFI CTRYAG 1 cut(s) 1464
BstV1I GCAGC 3 cut(s) 122, 751, 1035
BstV2I GAAGAC 2 cut(s) 1281, 1560
BstX2I RGATCY 1 cut(s) 835
BstXI CCANNNNNNTGG 1 cut(s) 1444
BstYI RGATCY 1 cut(s) 835
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 2 cut(s) 709, 860
BtgI CCRYGG 2 cut(s) 14, 1031
BtsCI GGATG 2 cut(s) 952, 1632
Cac8I GCNNGC 3 cut(s) 520, 1423, 1489
CciI TCATGA 1 cut(s) 352
Csp6I GTAC 7 cut(s) 133, 305, 362, 581, 690, 1202, 1217
CviQI GTAC 7 cut(s) 133, 305, 362, 581, 690, 1202, 1217
DdeI CTNAG 4 cut(s) 530, 1164, 1470, 1728
DpnI GATC 5 cut(s) 258, 837, 1693, 1707, 1734
DpnII GATC 5 cut(s) 256, 835, 1691, 1705, 1732
DraI TTTAAA 1 cut(s) 1114
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 1 cut(s) 958
EarI CTCTTC 1 cut(s) 958
Ecl136II GAGCTC 1 cut(s) 1742
Eco130I CCWWGG 2 cut(s) 14, 1031
Eco147I AGGCCT 1 cut(s) 709
Eco24I GRGCYC 1 cut(s) 1744
Eco32I GATATC 1 cut(s) 1099
Eco53kI GAGCTC 1 cut(s) 1742
Eco57I CTGAAG 2 cut(s) 1275, 1632
Eco88I CYCGRG 1 cut(s) 1515
EcoICRI GAGCTC 1 cut(s) 1742
EcoNI CCTNNNNNAGG 2 cut(s) 81, 941
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 2 cut(s) 14, 1031
EcoT22I ATGCAT 1 cut(s) 856
EcoT38I GRGCYC 1 cut(s) 1744
ErhI CCWWGG 2 cut(s) 14, 1031
FalI AAGNNNNNCTT 2 cut(s) 1630, 1662
FaqI GGGAC 1 cut(s) 327
FauNDI CATATG 1 cut(s) 508
FblI GTMKAC 1 cut(s) 1775
Fnu4HI GCNGC 3 cut(s) 111, 765, 1024
FokI GGATG 2 cut(s) 959, 1639
FriOI GRGCYC 1 cut(s) 1744
Fsp4HI GCNGC 3 cut(s) 111, 765, 1024
FspBI CTAG 5 cut(s) 254, 276, 1157, 1176, 1395
GluI GCNGC 3 cut(s) 111, 765, 1024
GsuI CTGGAG 2 cut(s) 375, 1545
HaeIII GGCC 2 cut(s) 709, 860
HinfI GANTC 9 cut(s) 73, 181, 409, 424, 467, 559, 918, 1319, 1429
HphI GGTGA 3 cut(s) 671, 1203, 1631
Hpy166II GTNNAC 2 cut(s) 1392, 1776
Hpy188I TCNGA 2 cut(s) 1090, 1651
Hpy8I GTNNAC 2 cut(s) 1392, 1776
HpyAV CCTTC 4 cut(s) 20, 937, 1192, 1646
HpyCH4III ACNGT 4 cut(s) 103, 299, 689, 1119
HpyCH4IV ACGT 2 cut(s) 398, 878
HpyF10VI GCNNNNNNNGC 7 cut(s) 808, 907, 991, 1000, 1378, 1517, 1665
HpyF3I CTNAG 4 cut(s) 530, 1164, 1470, 1728
HpySE526I ACGT 2 cut(s) 398, 878
Kzo9I GATC 5 cut(s) 256, 835, 1691, 1705, 1732
LguI GCTCTTC 1 cut(s) 958
LmnI GCTCC 5 cut(s) 1153, 1295, 1378, 1739, 1747
Lsp1109I GCAGC 3 cut(s) 122, 751, 1035
LweI GCATC 6 cut(s) 56, 97, 972, 1520, 1529, 1733
MaeI CTAG 5 cut(s) 254, 276, 1157, 1176, 1395
MaeII ACGT 2 cut(s) 398, 878
MaeIII GTNAC 3 cut(s) 18, 401, 1185
MalI GATC 5 cut(s) 258, 837, 1693, 1707, 1734
MboI GATC 5 cut(s) 256, 835, 1691, 1705, 1732
MfeI CAATTG 2 cut(s) 584, 1769
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 2 cut(s) 224, 1744
MlyI GAGTC 2 cut(s) 190, 461
MmeI TCCRAC 1 cut(s) 1017
Mph1103I ATGCAT 1 cut(s) 856
MseI TTAA 6 cut(s) 477, 732, 972, 1056, 1082, 1113
MslI CAYNNNNRTG 1 cut(s) 657
MunI CAATTG 2 cut(s) 584, 1769
Mva1269I GAATGC 1 cut(s) 996
MwoI GCNNNNNNNGC 7 cut(s) 808, 907, 991, 1000, 1378, 1517, 1665
NcoI CCATGG 2 cut(s) 14, 1031
NdeI CATATG 1 cut(s) 508
NdeII GATC 5 cut(s) 256, 835, 1691, 1705, 1732
NmeAIII GCCGAG 2 cut(s) 469, 886
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 856
NspV TTCGAA 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 1515
PagI TCATGA 1 cut(s) 352
PceI AGGCCT 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 958
PctI GAATGC 1 cut(s) 996
PfeI GAWTC 7 cut(s) 73, 409, 424, 559, 918, 1319, 1429
PkrI GCNGC 3 cut(s) 112, 766, 1025
PleI GAGTC 2 cut(s) 189, 461
PpsI GAGTC 2 cut(s) 189, 461
PsiI TTATAA 1 cut(s) 1304
Psp124BI GAGCTC 1 cut(s) 1744
PsuI RGATCY 1 cut(s) 835
RsaI GTAC 7 cut(s) 134, 306, 363, 582, 691, 1203, 1218
RsaNI GTAC 7 cut(s) 133, 305, 362, 581, 690, 1202, 1217
RseI CAYNNNNRTG 1 cut(s) 657
SacI GAGCTC 1 cut(s) 1744
SapI GCTCTTC 1 cut(s) 958
SaqAI TTAA 6 cut(s) 477, 732, 972, 1056, 1082, 1113
SatI GCNGC 3 cut(s) 111, 765, 1024
Sau3AI GATC 5 cut(s) 256, 835, 1691, 1705, 1732
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 2 cut(s) 190, 461
SduI GDGCHC 2 cut(s) 224, 1744
SfaNI GCATC 6 cut(s) 56, 97, 972, 1520, 1529, 1733
SfcI CTRYAG 1 cut(s) 1464
Sfr274I CTCGAG 1 cut(s) 1515
SfuI TTCGAA 1 cut(s) 160
SlaI CTCGAG 1 cut(s) 1515
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 128, 1515, 1719
SmoI CTYRAG 3 cut(s) 128, 1515, 1719
SseBI AGGCCT 1 cut(s) 709
SspI AATATT 1 cut(s) 1018
SspMI CTAG 5 cut(s) 254, 276, 1157, 1176, 1395
SstI GAGCTC 1 cut(s) 1744
StuI AGGCCT 1 cut(s) 709
StyI CCWWGG 2 cut(s) 14, 1031
TaaI ACNGT 4 cut(s) 103, 299, 689, 1119
TaiI ACGT 2 cut(s) 401, 881
TaqI TCGA 7 cut(s) 79, 142, 160, 184, 238, 675, 1516
TatI WGTACW 4 cut(s) 361, 580, 689, 1216
TfiI GAWTC 7 cut(s) 73, 409, 424, 559, 918, 1319, 1429
Tru1I TTAA 6 cut(s) 477, 732, 972, 1056, 1082, 1113
Tru9I TTAA 6 cut(s) 477, 732, 972, 1056, 1082, 1113
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 110, 764, 1023
Tsp45I GTSAC 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 150, 436
XagI CCTNNNNNAGG 2 cut(s) 81, 941
XapI RAATTY 1 cut(s) 1277
XhoI CTCGAG 1 cut(s) 1515
XmiI GTMKAC 1 cut(s) 1775
XspI CTAG 5 cut(s) 254, 276, 1157, 1176, 1395
ZrmI AGTACT 1 cut(s) 691
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.