Rroxscaffold_1G00047120

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000414
Physical Location & Seq
Forward (+)
66659495 .. 66661450
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047120.1

Sequence Viewer

Length: 267 bp
ATGATTTTTAATCCAAGAGTAGGTGTGAACCACCATGGCCAAACCATTGTTTTTGGATGTGCATTTTTGCGCGATGAGACCTTTGATTCGTTTGTTTGGTTGTTGAAAACGTGGTTTGCAGCAATGCCAAAAGGTGCCCGGAATGTTATTATCACCGATCAAGATCAAGCAATGAGTAAGGCAATTGCTCATGTTTTGCCAAACACATTTCACAGGTATTGTGTGTGGCATATTCTGAAAAAAAAATTCCAAAGAAGAGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

88

Amino Acids

10.33

Weight (kDa)

10.14

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 4 - 81 2.2e-22 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AspLEI GCGC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 71
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse3DI GCAATG 2 cut(s) 129, 177
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 2 cut(s) 129, 177
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 157, 163
Bsp19I CCATGG 1 cut(s) 34
BspANI GGCC 1 cut(s) 39
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 129, 177
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 2 cut(s) 157, 163
BssT1I CCWWGG 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 160, 166
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 157, 163
BstSCI CCNGG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 62
CfoI GCGC 1 cut(s) 72
CviAII CATG 2 cut(s) 35, 191
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 2 cut(s) 159, 165
DpnII GATC 2 cut(s) 157, 163
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 38, 194
FaiI YATR 3 cut(s) 36, 192, 231
FatI CATG 2 cut(s) 34, 190
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 139
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 38, 194
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 62, 119
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 38, 194
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 157, 163
LpnPI CCDG 2 cut(s) 152, 199
Lsp1109I GCAGC 1 cut(s) 131
MaeII ACGT 1 cut(s) 110
MalI GATC 2 cut(s) 159, 165
MboI GATC 2 cut(s) 157, 163
MboII GAAGA 1 cut(s) 267
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 2 cut(s) 183, 245
MluNI TGGCCA 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
MseI TTAA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 39
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 183
MvnI CGCG 1 cut(s) 72
NciI CCSGG 1 cut(s) 139
NcoI CCATGG 1 cut(s) 34
NdeII GATC 2 cut(s) 157, 163
NlaIII CATG 2 cut(s) 38, 194
NlaIV GGNNCC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 157, 163
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 139
SetI ASST 5 cut(s) 25, 83, 113, 136, 218
Sse9I AATT 2 cut(s) 183, 245
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 34
TaiI ACGT 1 cut(s) 113
TasI AATT 2 cut(s) 183, 245
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 1 cut(s) 119
XapI RAATTY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.