Rh2DG504700

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000414
Physical Location & Seq
Reverse (-)
72788769 .. 72790070
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG504700.1

Sequence Viewer

Length: 471 bp
ATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAAAAGGCAAAAGGCTTGAAGAAGAAACACAGTTGCAAAGGTTGCAAAAAACACCCCAAGGCTTGGCATGAGAATAAAGGCAAGGGAAAGAAAAAATCTTCTAGGAAAGATAATTCAATTCAAGAATCATATCAGGATCAAGAAGCTCAACCATCAAGAAAGAGAAATAAGAAAATGTCTAGCAAGGATCAATCAGTACCTCAACAAACCCAGGATCAAGCACAACCATCAAGAAAGAGAAATACAAGATCATCTAATAAGGATCAATCATTACCTCAAGGATCTCAGAATCAAGAAGCTGAATCTTCAAGAAAGAGAAAAAAGAAATCCTCTACTGAGAATCAATCACTACCTCAAAACTCTCAGGATCAAGGAGCTCCACCATCAAGCAAGAGAAAGAAACAGTTGTCTACTCGTTTAGTTGGTTATCATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

156

Amino Acids

17.75

Weight (kDa)

10.36

Isoelectric Point (pI)

91.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 96
AccI GTMKAC 1 cut(s) 443
AclWI GGATC 6 cut(s) 177, 228, 255, 303, 322, 408
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 7 cut(s) 8, 23, 35, 52, 150, 155, 342
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 4 cut(s) 27, 179, 332, 410
AluI AGCT 4 cut(s) 27, 179, 332, 410
Alw21I GWGCWC 1 cut(s) 412
AlwI GGATC 6 cut(s) 177, 228, 255, 303, 322, 408
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 412
BccI CCATC 3 cut(s) 193, 268, 424
BciT130I CCWGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 135, 213
Bme1390I CCNGG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 90, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 90, 243
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 3 cut(s) 332, 360, 410
BsiHKAI GWGCWC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
BspCNI CTCAG 3 cut(s) 331, 361, 409
BspPI GGATC 6 cut(s) 177, 228, 255, 303, 322, 408
BssECI CCNNGG 2 cut(s) 90, 243
BssMI GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 65, 438
BstAPI GCANNNNNTGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 318, 369, 396
BstKTI GATC 7 cut(s) 172, 223, 250, 284, 298, 317, 403
BstMBI GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 101
CviJI RGCY 6 cut(s) 27, 48, 95, 179, 332, 410
CviKI_1 RGCY 6 cut(s) 27, 48, 95, 179, 332, 410
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 3 cut(s) 318, 369, 396
DpnI GATC 7 cut(s) 171, 222, 249, 283, 297, 316, 402
DpnII GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 163, 465, 469
FatI CATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 412
FspBI CTAG 2 cut(s) 135, 213
Hin1II CATG 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 4 cut(s) 158, 322, 335, 373
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 9 cut(s) 8, 155, 167, 173, 189, 264, 326, 342, 398
Hpy8I GTNNAC 1 cut(s) 444
HpyCH4III ACNGT 2 cut(s) 65, 438
HpyCH4V TGCA 2 cut(s) 69, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 3 cut(s) 318, 369, 396
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
LmnI GCTCC 2 cut(s) 407, 415
LpnPI CCDG 4 cut(s) 152, 230, 257, 383
MaeI CTAG 2 cut(s) 135, 213
MalI GATC 7 cut(s) 171, 222, 249, 283, 297, 316, 402
MboI GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
MboII GAAGA 4 cut(s) 64, 67, 123, 330
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 3 cut(s) 18, 145, 150
MnlI CCTC 4 cut(s) 243, 318, 373, 396
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
NlaIII CATG 1 cut(s) 104
PfeI GAWTC 4 cut(s) 158, 322, 335, 373
PflMI CCANNNNNTGG 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 412
Sau3AI GATC 7 cut(s) 169, 220, 247, 281, 295, 314, 400
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 412
SetI ASST 8 cut(s) 29, 76, 181, 235, 310, 334, 388, 412
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 3 cut(s) 18, 145, 150
SspMI CTAG 2 cut(s) 135, 213
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 65, 438
TasI AATT 3 cut(s) 18, 145, 150
TfiI GAWTC 4 cut(s) 158, 322, 335, 373
Van91I CCANNNNNTGG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 2 cut(s) 135, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.