RLG00000016047

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000414
Physical Location & Seq
Forward (+)
3444373 .. 3445945
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016047

Sequence Viewer

Length: 693 bp
ATGAATGAAGCCAATGTAATGGAAGATAAGAAATTGACTATAGCTGAGCGATATAGAACAGCTTGCCCTATATTAGTTGATATTGCATCTCGAGCATCTGGAGATGAAAAAGCCTTTGAATTGGTAATGAAAGTCGCACATGAGTTAAGAAAACAGGTTGAAGACATCTTCTTGGACAACTCAACAACGAGTATTGATGAACTGCATAATTCTTTGCAAGGTGGGGGTGAGAGGATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAGAAGGCAAAAGGTTTGAAGAAGAAAAACAATTGTAAAGGTCGCAAAAAAGGCCCTAAGGCTTGGCATGAGAATATAGGCAAGGGAAAGAAAAAATCTTCTAGGAAAGATAATTCAATTCAAGAATCAAATAAGGATCAAGAAGCTCAACCATCAAGAAAGAGGAATAAGAAATTGTCTAGTAAGGATCAATCAGTACCTCAACAATCCCAGGATCAAACTCAACCATCAAAAAAGAGAAATACAAGATCGTCTAATAAGGATCAATCATTACCTCAAGCATCTCAGAATCAAGAAGCTGAACCTTCAAGAAAGAGAAATAAGAAATCCTCTACAGATCAATCACTACGTCAAGACTCTCAGGATCAAGGAGCTCAACCATCAAGCAAAAGAAAGAAACAATTGTCTACTCGTTTAATACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

231

Amino Acids

26.03

Weight (kDa)

9.95

Isoelectric Point (pI)

73.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 674
AclWI GGATC 5 cut(s) 411, 462, 489, 537, 639
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 465
AgsI TTSAA 8 cut(s) 119, 161, 242, 257, 286, 384, 389, 576
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 6 cut(s) 44, 62, 261, 413, 566, 641
AluI AGCT 6 cut(s) 44, 62, 261, 413, 566, 641
Alw21I GWGCWC 1 cut(s) 643
AlwI GGATC 5 cut(s) 411, 462, 489, 537, 639
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 324
BanII GRGCYC 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 643
BccI CCATC 4 cut(s) 229, 427, 502, 655
BciT130I CCWGG 1 cut(s) 479
BfaI CTAG 2 cut(s) 369, 447
BfmI CTRYAG 2 cut(s) 39, 600
BlpI GCTNAGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 3 cut(s) 95, 104, 557
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 477
Bse21I CCTNAGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 1 cut(s) 240
BseMII CTCAG 3 cut(s) 36, 566, 641
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 90
BsnI GGCC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
Bsp1720I GCTNAGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 3 cut(s) 37, 565, 640
BspPI GGATC 5 cut(s) 411, 462, 489, 537, 639
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
Bst2UI CCWGG 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 4 cut(s) 45, 324, 552, 627
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 7 cut(s) 406, 457, 484, 518, 532, 607, 634
BstMBI GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
BstMWI GCNNNNNNNGC 2 cut(s) 92, 318
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 2 cut(s) 39, 600
BstV2I GAAGAC 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 464
CviAII CATG 2 cut(s) 140, 335
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 4 cut(s) 45, 324, 552, 627
DpnI GATC 7 cut(s) 405, 456, 483, 517, 531, 606, 633
DpnII GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
Ecl136II GAGCTC 1 cut(s) 641
Eco24I GRGCYC 1 cut(s) 643
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 641
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 643
FaeI CATG 2 cut(s) 143, 338
FaiI YATR 7 cut(s) 41, 54, 71, 141, 207, 336, 344
FatI CATG 2 cut(s) 139, 334
FblI GTMKAC 1 cut(s) 674
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 643
FspBI CTAG 2 cut(s) 369, 447
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 321
Hin1II CATG 2 cut(s) 143, 338
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 3 cut(s) 392, 556, 623
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 2 cut(s) 270, 555
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 2 cut(s) 265, 582
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 3 cut(s) 86, 205, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 318
HpyF3I CTNAG 4 cut(s) 45, 324, 552, 627
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 2 cut(s) 143, 338
Kzo9I GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 5 cut(s) 84, 140, 464, 491, 614
LweI GCATC 3 cut(s) 95, 104, 557
MaeI CTAG 2 cut(s) 369, 447
MaeII ACGT 1 cut(s) 616
MalI GATC 7 cut(s) 405, 456, 483, 517, 531, 606, 633
MboI GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
MboII GAAGA 6 cut(s) 35, 160, 173, 298, 301, 357
MfeI CAATTG 2 cut(s) 298, 668
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 9 cut(s) 32, 119, 208, 252, 298, 379, 384, 440, 668
MlyI GAGTC 1 cut(s) 617
MnlI CCTC 5 cut(s) 225, 423, 477, 552, 607
MseI TTAA 2 cut(s) 146, 683
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 2 cut(s) 298, 668
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 92, 318
NdeII GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
NlaIII CATG 2 cut(s) 143, 338
PaeR7I CTCGAG 1 cut(s) 90
PfeI GAWTC 2 cut(s) 392, 556
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspPI GGNCC 1 cut(s) 320
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SacI GAGCTC 1 cut(s) 643
SaqAI TTAA 2 cut(s) 146, 683
Sau3AI GATC 7 cut(s) 403, 454, 481, 515, 529, 604, 631
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 3 cut(s) 95, 104, 557
SfcI CTRYAG 2 cut(s) 39, 600
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 90, 543
SmoI CTYRAG 2 cut(s) 90, 543
Sse9I AATT 9 cut(s) 32, 119, 208, 252, 298, 379, 384, 440, 668
SspMI CTAG 2 cut(s) 369, 447
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 477
TaiI ACGT 1 cut(s) 619
TaqI TCGA 1 cut(s) 91
TasI AATT 9 cut(s) 32, 119, 208, 252, 298, 379, 384, 440, 668
TfiI GAWTC 2 cut(s) 392, 556
Tru1I TTAA 2 cut(s) 146, 683
Tru9I TTAA 2 cut(s) 146, 683
TspDTI ATGAA 5 cut(s) 17, 21, 120, 143, 213
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 674
XspI CTAG 2 cut(s) 369, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.