Rorug03G0325200

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
35726061 .. 35728983
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0325200.1

Sequence Viewer

Length: 1578 bp
ATGAGCTTTTCCCAAGACACTTTGAGAGGCTCTAGAGAGCCACCCAATGTTAATGCACCATACACTTGCTCCTCCTCCCTAGTCTCAGATCACTACTGTCACCACAATGAGCTCACAGTCAAAACCATTTTGAAGAAGATGCTTAGGGAGCTTGGCCTGTCCTGTTTTCTTCCTCCACCTCCACAAACAAGAACCCAAAATGAAGATGATGATGACGACAGCAATGGCAGCAAGAAGATGAGTTTGGAGCACAACAAGGCATGGCTGCTAGCAGAGTCAGGTGGGTGTGGAGCAGACTTGACTAGTGCTGATCCACAATCAGTTCACTCCTCTTTCAGGTTCAGCTTCTGCTCTCAAGTTGAGCTTGAGTCTTTGAACATGACCTCTTCTTCTGCTGCCACTGTTCTGATGGTCAACTTGGACAATGGCTTGTGCGAGTCCAAAGCTAAAGAATTGAAATGGAGGAGATTCGAGTCGTTAGAGAGAAGCATATCCCCAATGGCCAACACTTTGGTTCGATTCAGCTTCGCCCAAATTCATGCCGCCACTCGCAATTTCTCACAAGGCAGAGTTTTGGGGAGAGGAGCTTTGAGCTGTGTGTTTAGGGGTAGAGTTGGGATTTTGAGGACAGTTATGGCAATCAAGCGATTGGACAAGGAAGATAAGGAGTCTTCTAAGGCGTTTTGTAGAGAGTTGATGATTTCTAGCTCTCTTCACAACCCAAATGTAACACCTCTTTTGGGGTTTTGCATAGATCCAGAGGAGGGCTTGTTTTTGGTTTACAAGTATGTCTCTGGGGGAAGCCTAGAGCGTCACTTGCATGAGAAAAAGAGGGGAGTGCAGGGCTCTTCAGCACTTTCTTGGTCTGTAAGGCATAAAGTTGCAATAGGAATAGCAGAGGCAATTGCATATCTACATAATGGCACCGAAAGGTGCATTGTTCACAGAGACATCAAACCCTCAAACATTCTCCTTTCTTCGAAGAAAACACCCAAGTTATGTGATTTTGGATTAGCCACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACGGTCAAAGGAACATTTGGTTACTTAGCTCCTGAGTATTTCCAACATGGAAAGATATCAGATAAAACTGATGTTTATGCTTTTGGTGTCGTCTTGCTGGAGTTGATAACGGGAAGGAAGCCAATTGAAGCAAGAAGGCCACAAGGAGAAGAAAACTTGGTTCTGTGGGCAAAACCTCTCTTGCATAAAGGTAAAGGTGCTATCGAAGAGTTGCTTGATCCTCGGCTAAAATGCACTTTGACAAATTCAAATCAAATAGGGCGGATGATTGAAGCTGCAGCCGCCTGCATAACTAGTGAAGAATCTCGGAGGCCAAACATTGGTGAGATAATTGCAATACTTAAAGGGGAAGAAGAGCCTATTTACTCCAAGAGAAAGAAGTCTGGTTTTCTGGGAAATGGGTTGGTCGTTGATTGTTATTCTCAATTACAGCAAACAAATAGTGAGATGAAGAGTCACCTAGCTTTGGCTATGCTCGGAGTTTCTGAGTTTGAGGATGATGATCATCTTTACGGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

58.19

Weight (kDa)

8.51

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 187 - 407 4.4e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 188 - 400 4.7e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 1 cut(s) 1376
AciI CCGC 3 cut(s) 543, 1318, 1338
AclWI GGATC 3 cut(s) 305, 749, 1268
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 2 cut(s) 534, 1300
AcuI CTGAAG 2 cut(s) 834, 1020
AfiI CCNNNNNNNGG 5 cut(s) 336, 740, 764, 1376, 1522
AgsI TTSAA 6 cut(s) 133, 376, 457, 1184, 1305, 1328
AhlI ACTAGT 2 cut(s) 302, 1349
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
Alw21I GWGCWC 2 cut(s) 114, 252
Alw26I GTCTC 3 cut(s) 88, 796, 942
AlwI GGATC 3 cut(s) 305, 749, 1268
AlwNI CAGNNNCTG 1 cut(s) 348
AoxI GGCC 4 cut(s) 154, 501, 1193, 1367
ApeKI GCWGC 5 cut(s) 228, 265, 395, 1331, 1334
ApoI RAATTY 2 cut(s) 534, 1300
AsuHPI GGTGA 3 cut(s) 92, 1391, 1505
AsuII TTCGAA 1 cut(s) 980
AsuNHI GCTAGC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 503
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 2 cut(s) 114, 848
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 114, 252
BbvI GCAGC 5 cut(s) 240, 252, 382, 1318, 1346
BccI CCATC 1 cut(s) 403
BclI TGATCA 1 cut(s) 1558
BcoDI GTCTC 3 cut(s) 88, 796, 942
BcuI ACTAGT 2 cut(s) 302, 1349
BfaI CTAG 8 cut(s) 33, 80, 269, 303, 705, 806, 1350, 1517
BfmI CTRYAG 1 cut(s) 1332
BisI GCNGC 7 cut(s) 229, 266, 396, 543, 1332, 1335, 1338
BlsI GCNGC 7 cut(s) 230, 267, 397, 544, 1333, 1336, 1339
BmiI GGNNCC 1 cut(s) 925
BmsI GCATC 1 cut(s) 129
BmtI GCTAGC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 1175
Bpu10I CCTNAGC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 980
BpuEI CTTGAG 2 cut(s) 339, 386
BsaBI GATNNNNATC 2 cut(s) 1557, 1560
BsaJI CCNNGG 1 cut(s) 1277
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 755, 785
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 740, 764, 1376, 1522
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 2 cut(s) 1557, 1560
BseDI CCNNGG 1 cut(s) 1277
BseGI GGATG 2 cut(s) 1326, 1558
BseJI GATNNNNATC 2 cut(s) 1557, 1560
BseLI CCNNNNNNNGG 5 cut(s) 336, 740, 764, 1376, 1522
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 99, 1080, 1533
BseRI GAGGAG 6 cut(s) 61, 64, 319, 478, 597, 776
BseXI GCAGC 5 cut(s) 240, 252, 382, 1318, 1346
BsgI GTGCAG 2 cut(s) 860, 1014
BshFI GGCC 4 cut(s) 156, 503, 1195, 1369
BshNI GGYRCC 1 cut(s) 923
BsiHKAI GWGCWC 2 cut(s) 114, 252
BslI CCNNNNNNNGG 5 cut(s) 336, 740, 764, 1376, 1522
BsmAI GTCTC 3 cut(s) 88, 796, 942
BsnI GGCC 4 cut(s) 156, 503, 1195, 1369
Bsp119I TTCGAA 1 cut(s) 980
Bsp1286I GDGCHC 3 cut(s) 114, 252, 848
Bsp143I GATC 5 cut(s) 88, 310, 754, 1273, 1558
BspACI CCGC 3 cut(s) 543, 1318, 1338
BspANI GGCC 4 cut(s) 156, 503, 1195, 1369
BspCNI CTCAG 3 cut(s) 98, 1081, 1534
BspLI GGNNCC 1 cut(s) 925
BspMAI CTGCAG 1 cut(s) 1336
BspOI GCTAGC 1 cut(s) 272
BspPI GGATC 3 cut(s) 305, 749, 1268
BspQI GCTCTTC 2 cut(s) 853, 1404
BspT104I TTCGAA 1 cut(s) 980
BspT107I GGYRCC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 1277
BssMI GATC 5 cut(s) 88, 310, 754, 1273, 1558
Bst4CI ACNGT 5 cut(s) 98, 118, 403, 631, 1060
Bst6I CTCTTC 6 cut(s) 391, 717, 853, 1257, 1404, 1502
BstBI TTCGAA 1 cut(s) 980
BstC8I GCNNGC 2 cut(s) 270, 1342
BstDEI CTNAG 6 cut(s) 85, 143, 675, 1081, 1089, 1542
BstENI CCTNNNNNAGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 1326, 1558
BstKTI GATC 5 cut(s) 91, 313, 757, 1276, 1561
BstMAI GTCTC 3 cut(s) 88, 796, 942
BstMBI GATC 5 cut(s) 88, 310, 754, 1273, 1558
BstMWI GCNNNNNNNGC 4 cut(s) 148, 228, 817, 1337
BstSFI CTRYAG 1 cut(s) 1332
BstV1I GCAGC 5 cut(s) 240, 252, 382, 1318, 1346
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 1 cut(s) 511
BstYI RGATCY 1 cut(s) 754
BsuRI GGCC 4 cut(s) 156, 503, 1195, 1369
BtsCI GGATG 2 cut(s) 1326, 1558
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 270, 1342
CaiI CAGNNNCTG 1 cut(s) 348
CseI GACGC 1 cut(s) 800
CviAII CATG 6 cut(s) 261, 379, 539, 821, 1020, 1103
DdeI CTNAG 6 cut(s) 85, 143, 675, 1081, 1089, 1542
DpnI GATC 5 cut(s) 90, 312, 756, 1275, 1560
DpnII GATC 5 cut(s) 88, 310, 754, 1273, 1558
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 6 cut(s) 391, 717, 853, 1257, 1404, 1502
EarI CTCTTC 6 cut(s) 391, 717, 853, 1257, 1404, 1502
EciI GGCGGA 1 cut(s) 1333
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 2 cut(s) 114, 848
Eco32I GATATC 1 cut(s) 1113
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 834, 1020
EcoICRI GAGCTC 1 cut(s) 112
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 1113
EcoT38I GRGCYC 2 cut(s) 114, 848
FaeI CATG 6 cut(s) 264, 382, 542, 824, 1023, 1106
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 1254, 1286
FatI CATG 6 cut(s) 260, 378, 538, 820, 1019, 1102
FbaI TGATCA 1 cut(s) 1558
Fnu4HI GCNGC 7 cut(s) 229, 266, 396, 543, 1332, 1335, 1338
FokI GGATG 2 cut(s) 1333, 1565
FriOI GRGCYC 2 cut(s) 114, 848
Fsp4HI GCNGC 7 cut(s) 229, 266, 396, 543, 1332, 1335, 1338
FspBI CTAG 8 cut(s) 33, 80, 269, 303, 705, 806, 1350, 1517
GluI GCNGC 7 cut(s) 229, 266, 396, 543, 1332, 1335, 1338
GsuI CTGGAG 1 cut(s) 1175
HaeIII GGCC 4 cut(s) 156, 503, 1195, 1369
HgaI GACGC 1 cut(s) 800
Hin1II CATG 6 cut(s) 264, 382, 542, 824, 1023, 1106
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 9 cut(s) 275, 368, 437, 468, 473, 519, 668, 1358, 1510
HphI GGTGA 3 cut(s) 92, 1391, 1505
Hpy166II GTNNAC 4 cut(s) 325, 415, 781, 943
Hpy188I TCNGA 6 cut(s) 88, 408, 1117, 1365, 1535, 1543
Hpy188III TCNNGA 3 cut(s) 33, 758, 1088
Hpy8I GTNNAC 4 cut(s) 325, 415, 781, 943
HpyAV CCTTC 3 cut(s) 1044, 1164, 1185
HpyCH4III ACNGT 5 cut(s) 98, 118, 403, 631, 1060
HpyCH4IV ACGT 1 cut(s) 1573
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 228, 817, 1337
HpyF3I CTNAG 6 cut(s) 85, 143, 675, 1081, 1089, 1542
HpySE526I ACGT 1 cut(s) 1573
Hsp92II CATG 6 cut(s) 264, 382, 542, 824, 1023, 1106
Ksp22I TGATCA 1 cut(s) 1558
Kzo9I GATC 5 cut(s) 88, 310, 754, 1273, 1558
LguI GCTCTTC 2 cut(s) 853, 1404
LmnI GCTCC 6 cut(s) 74, 148, 247, 290, 584, 1090
Lsp1109I GCAGC 5 cut(s) 240, 252, 382, 1318, 1346
LweI GCATC 1 cut(s) 129
MaeI CTAG 8 cut(s) 33, 80, 269, 303, 705, 806, 1350, 1517
MaeII ACGT 1 cut(s) 1573
MaeIII GTNAC 5 cut(s) 98, 727, 812, 1076, 1511
MalI GATC 5 cut(s) 90, 312, 756, 1275, 1560
MboI GATC 5 cut(s) 88, 310, 754, 1273, 1558
MfeI CAATTG 2 cut(s) 903, 1179
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 3 cut(s) 114, 252, 848
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 8 cut(s) 452, 534, 553, 903, 1179, 1300, 1386, 1481
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 6 cut(s) 284, 377, 446, 482, 677, 1519
MmeI TCCRAC 1 cut(s) 1123
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
MseI TTAA 2 cut(s) 51, 1398
MslI CAYNNNNRTG 2 cut(s) 105, 819
Msp20I TGGCCA 1 cut(s) 503
MunI CAATTG 2 cut(s) 903, 1179
MwoI GCNNNNNNNGC 4 cut(s) 148, 228, 817, 1337
NdeII GATC 5 cut(s) 88, 310, 754, 1273, 1558
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 6 cut(s) 264, 382, 542, 824, 1023, 1106
NlaIV GGNNCC 1 cut(s) 925
NmeAIII GCCGAG 1 cut(s) 1258
NmuCI GTSAC 3 cut(s) 98, 812, 1511
NspV TTCGAA 1 cut(s) 980
PciSI GCTCTTC 2 cut(s) 853, 1404
PfeI GAWTC 3 cut(s) 468, 519, 1358
PflMI CCANNNNNTGG 1 cut(s) 1376
PkrI GCNGC 7 cut(s) 230, 267, 397, 544, 1333, 1336, 1339
PleI GAGTC 6 cut(s) 283, 376, 445, 481, 676, 1518
PpsI GAGTC 6 cut(s) 283, 376, 445, 481, 676, 1518
Psp124BI GAGCTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 1336
PstNI CAGNNNCTG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 754
RseI CAYNNNNRTG 2 cut(s) 105, 819
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 2 cut(s) 853, 1404
SaqAI TTAA 2 cut(s) 51, 1398
SatI GCNGC 7 cut(s) 229, 266, 396, 543, 1332, 1335, 1338
Sau3AI GATC 5 cut(s) 88, 310, 754, 1273, 1558
SchI GAGTC 6 cut(s) 284, 377, 446, 482, 677, 1519
SduI GDGCHC 3 cut(s) 114, 252, 848
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 980
SmiMI CAYNNNNRTG 2 cut(s) 105, 819
SmlI CTYRAG 2 cut(s) 354, 365
SmoI CTYRAG 2 cut(s) 354, 365
SpeI ACTAGT 2 cut(s) 302, 1349
Sse9I AATT 8 cut(s) 452, 534, 553, 903, 1179, 1300, 1386, 1481
SsiI CCGC 3 cut(s) 543, 1318, 1338
SspMI CTAG 8 cut(s) 33, 80, 269, 303, 705, 806, 1350, 1517
SstI GAGCTC 1 cut(s) 114
TaaI ACNGT 5 cut(s) 98, 118, 403, 631, 1060
TaiI ACGT 1 cut(s) 1576
TaqI TCGA 4 cut(s) 471, 517, 980, 1260
TasI AATT 8 cut(s) 452, 534, 553, 903, 1179, 1300, 1386, 1481
TauI GCSGC 2 cut(s) 545, 1340
TfiI GAWTC 3 cut(s) 468, 519, 1358
Tru1I TTAA 2 cut(s) 51, 1398
Tru9I TTAA 2 cut(s) 51, 1398
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 3 cut(s) 98, 812, 1511
TseI GCWGC 5 cut(s) 228, 265, 395, 1331, 1334
Tsp45I GTSAC 3 cut(s) 98, 812, 1511
TspDTI ATGAA 3 cut(s) 216, 527, 1520
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 1376
XagI CCTNNNNNAGG 1 cut(s) 334
XapI RAATTY 2 cut(s) 534, 1300
XbaI TCTAGA 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XspI CTAG 8 cut(s) 33, 80, 269, 303, 705, 806, 1350, 1517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.