Rmu_sc0000689.1_g000008

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000689.1
OG0000414
Physical Location & Seq
Reverse (-)
26161 .. 26874
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000689.1_g000008.1.cds

Sequence Viewer

Length: 714 bp
atggcatataatgcaaatgccgttaagaaagcaagtagtatattcaaggatgatgatagggtcaccaccttcttatcaaaatgtatgaataactatgaagaggagaatgagttcctacttgtatgggaagcaatgcttacagaatatggtgcacatgataatccttggttaactagtatattccgattaaaggaaaaatgggtaaaaccgtatgtgaagtggacatggactgctggaatgcatagcacccagttaagtgagagttttaatgctagcctaaaaccatatgttaagttagattatgatgtggttcaatttttcaagcactttgacagattgctcaatgataagcggtataaagagttagaggcagagtatgctttgtgctacaagttacctgctattgggatattttcttcaatggtgatcaaggctggaaatatttacactaaagctgcatttgaagaattccaaattcagtatgagaaggctcttgattacaacttagtcggatgtatccaagatggtgatgacattgtgtataaagttgcctttcatggtcatccaaaggagagatgtgttagggtggagaaagaccattcagtctcttgtagttgcaggttgtttgagattgaaggtattttgtgctgccatgcaataaaaatccttactaattacatgaatgtgaaagaaattcctgatcagtatatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

237

Amino Acids

27.72

Weight (kDa)

6.0

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
Acc36I ACCTGC 2 cut(s) 406, 609
AciI CCGC 1 cut(s) 352
AcsI RAATTY 3 cut(s) 467, 474, 693
AfiI CCNNNNNNNGG 2 cut(s) 190, 404
AgsI TTSAA 6 cut(s) 46, 314, 322, 420, 464, 635
AhlI ACTAGT 1 cut(s) 173
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 455
AluI AGCT 1 cut(s) 455
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 610
Alw44I GTGCAC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 455, 648
ApoI RAATTY 3 cut(s) 467, 474, 693
Asp700I GAANNNNTTC 1 cut(s) 110
AsuHPI GGTGA 3 cut(s) 55, 436, 539
AsuNHI GCTAGC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 442, 635
BccI CCATC 1 cut(s) 518
BceAI ACGGC 1 cut(s) 5
BciVI GTATCC 1 cut(s) 527
BclI TGATCA 2 cut(s) 426, 700
BcoDI GTCTC 1 cut(s) 610
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 174, 273
BfuAI ACCTGC 2 cut(s) 406, 609
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 2 cut(s) 456, 649
BlsI GCNGC 2 cut(s) 457, 650
BmrI ACTGGG 1 cut(s) 244
BmtI GCTAGC 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 404
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 3 cut(s) 55, 518, 562
BseLI CCNNNNNNNGG 2 cut(s) 190, 404
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 2 cut(s) 442, 635
BsiHKAI GWGCWC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 190, 404
BsmAI GTCTC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 426, 700
BspACI CCGC 1 cut(s) 352
BspMI ACCTGC 2 cut(s) 406, 609
BspOI GCTAGC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 2 cut(s) 426, 700
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 93
BstAPI GCANNNNNTGC 2 cut(s) 11, 377
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 505
BstEII GGTNACC 1 cut(s) 61
BstF5I GGATG 3 cut(s) 55, 518, 562
BstKTI GATC 2 cut(s) 429, 703
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 2 cut(s) 426, 700
BstMWI GCNNNNNNNGC 2 cut(s) 11, 377
BstPI GGTNACC 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 442, 635
BsuI GTATCC 1 cut(s) 527
BtsCI GGATG 3 cut(s) 55, 518, 562
BveI ACCTGC 2 cut(s) 406, 609
Cac8I GCNNGC 1 cut(s) 274
CviAII CATG 5 cut(s) 155, 225, 557, 653, 679
CviJI RGCY 4 cut(s) 276, 434, 455, 491
CviKI_1 RGCY 4 cut(s) 276, 434, 455, 491
DdeI CTNAG 1 cut(s) 505
DpnI GATC 2 cut(s) 428, 702
DpnII GATC 2 cut(s) 426, 700
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 164
Eco91I GGTNACC 1 cut(s) 61
EcoO65I GGTNACC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 5 cut(s) 158, 228, 560, 656, 682
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 5 cut(s) 154, 224, 556, 652, 678
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 2 cut(s) 426, 700
Fnu4HI GCNGC 2 cut(s) 456, 649
FokI GGATG 3 cut(s) 62, 525, 549
Fsp4HI GCNGC 2 cut(s) 456, 649
FspBI CTAG 2 cut(s) 174, 273
GluI GCNGC 2 cut(s) 456, 649
Hin1II CATG 5 cut(s) 158, 228, 560, 656, 682
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HpaI GTTAAC 1 cut(s) 171
HphI GGTGA 3 cut(s) 55, 436, 539
Hpy166II GTNNAC 3 cut(s) 152, 171, 222
Hpy188I TCNGA 2 cut(s) 185, 512
Hpy188III TCNNGA 2 cut(s) 494, 698
Hpy8I GTNNAC 3 cut(s) 152, 171, 222
HpyAV CCTTC 3 cut(s) 79, 481, 629
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 6 cut(s) 14, 152, 241, 458, 618, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 377
HpyF3I CTNAG 1 cut(s) 505
Hsp92II CATG 5 cut(s) 158, 228, 560, 656, 682
Ksp22I TGATCA 2 cut(s) 426, 700
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 2 cut(s) 426, 700
LpnPI CCDG 5 cut(s) 219, 263, 411, 420, 604
Lsp1109I GCAGC 2 cut(s) 442, 635
MaeI CTAG 2 cut(s) 174, 273
MaeIII GTNAC 2 cut(s) 61, 393
MalI GATC 2 cut(s) 428, 702
MboI GATC 2 cut(s) 426, 700
MboII GAAGA 3 cut(s) 110, 408, 476
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 5 cut(s) 314, 467, 474, 673, 693
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 2 cut(s) 94, 361
Mph1103I ATGCAT 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 7 cut(s) 24, 170, 188, 254, 267, 291, 712
MslI CAYNNNNRTG 1 cut(s) 683
Mva1269I GAATGC 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 11, 377
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 426, 700
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 5 cut(s) 158, 228, 560, 656, 682
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 243
PctI GAATGC 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 457, 650
PspEI GGTNACC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 683
SaqAI TTAA 7 cut(s) 24, 170, 188, 254, 267, 291, 712
SatI GCNGC 2 cut(s) 456, 649
Sau3AI GATC 2 cut(s) 426, 700
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 71, 400, 457, 623, 640
SmiMI CAYNNNNRTG 1 cut(s) 683
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 5 cut(s) 314, 467, 474, 673, 693
SsiI CCGC 1 cut(s) 352
SspI AATATT 1 cut(s) 442
SspMI CTAG 2 cut(s) 174, 273
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 210
TasI AATT 5 cut(s) 314, 467, 474, 673, 693
Tru1I TTAA 7 cut(s) 24, 170, 188, 254, 267, 291, 712
Tru9I TTAA 7 cut(s) 24, 170, 188, 254, 267, 291, 712
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 455, 648
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 101, 111, 545, 695
VneI GTGCAC 1 cut(s) 150
XapI RAATTY 3 cut(s) 467, 474, 693
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 174, 273
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.