Rmu_sc0000689.1_g000009

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000689.1
Physical Location & Seq
Reverse (-)
26934 .. 27578
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000689.1_g000009.1.cds

Sequence Viewer

Length: 645 bp
atgaacattaaattggataaatcaagtggtaggtacagagttgttcaatttgaagaaactcacagccatgatcttgtaatacaagagtgtgctcacatgctaccatctcaacgaaatgttacttcttcacaaggagctgagatggaattggcacaagattctggaatcccactgaagctttcattcgagttaatgggcagagaagtttgtggaagagaggctcttggattcactaaacaagatcagaaaaactatcttcaatctcagaggcaaaaaaaattggcatatggagaagcaggatgcttattaaaatacttccaaaagcaatcattagaaaatccctcatttttctatactgcgcaattggatagtgatgagcaaataacaaatattttttgggctgatgctaggatgatacttgattatggtttatttggtgatgttgtgagttttgacactacatatagaactaatgaagccaatggtccatttggagtatttgtgggatttaatcatcatcgtgagactgtaatctttggggcaacatttatgtatgatgaaacttctaattcatttacatggttatttgagacgtttttggaggcaatgtctaacaaggctccaaagtctatttttactgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

214

Amino Acids

24.49

Weight (kDa)

5.16

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 3 cut(s) 47, 53, 260
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 137, 178
AluI AGCT 2 cut(s) 137, 178
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 2 cut(s) 518, 584
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 2 cut(s) 112, 136
BcoDI GTCTC 2 cut(s) 518, 584
BfaI CTAG 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 621
BmsI GCATC 2 cut(s) 290, 394
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 593, 623
Bse3DI GCAATG 1 cut(s) 612
BseGI GGATG 2 cut(s) 305, 417
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 129, 278
BsiHKAI GWGCWC 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 518, 584
BsmBI CGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 70, 241
BspCNI CTCAG 2 cut(s) 130, 277
BspLI GGNNCC 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 612
BssMI GATC 2 cut(s) 70, 241
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 138, 264
BstF5I GGATG 2 cut(s) 305, 417
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 2 cut(s) 73, 244
BstMAI GTCTC 2 cut(s) 518, 584
BstMBI GATC 2 cut(s) 70, 241
BstNSI RCATGY 1 cut(s) 100
BtsCI GGATG 2 cut(s) 305, 417
BtsIMutI CAGTG 1 cut(s) 170
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 68, 97, 579
CviJI RGCY 7 cut(s) 66, 137, 178, 221, 401, 479, 620
CviKI_1 RGCY 7 cut(s) 66, 137, 178, 221, 401, 479, 620
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 138, 264
DpnI GATC 2 cut(s) 72, 243
DpnII GATC 2 cut(s) 70, 241
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 584
FaeI CATG 3 cut(s) 71, 100, 582
FatI CATG 3 cut(s) 67, 96, 578
FauNDI CATATG 1 cut(s) 286
FokI GGATG 2 cut(s) 312, 424
FspBI CTAG 1 cut(s) 408
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 1 cut(s) 360
HhaI GCGC 1 cut(s) 361
Hin1II CATG 3 cut(s) 71, 100, 582
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 3 cut(s) 158, 165, 228
HphI GGTGA 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 246, 267
Hpy188III TCNNGA 2 cut(s) 162, 521
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 593
HpyF3I CTNAG 2 cut(s) 138, 264
HpySE526I ACGT 1 cut(s) 593
Hsp92II CATG 3 cut(s) 71, 100, 582
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 2 cut(s) 70, 241
LmnI GCTCC 2 cut(s) 134, 625
LpnPI CCDG 2 cut(s) 147, 282
LweI GCATC 2 cut(s) 290, 394
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 72, 243
MboI GATC 2 cut(s) 70, 241
MboII GAAGA 4 cut(s) 65, 117, 225, 248
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 6 cut(s) 11, 47, 146, 278, 362, 568
MnlI CCTC 4 cut(s) 211, 261, 352, 595
MseI TTAA 4 cut(s) 9, 191, 308, 510
MslI CAYNNNNRTG 3 cut(s) 66, 519, 577
MunI CAATTG 1 cut(s) 362
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 70, 241
NlaIII CATG 3 cut(s) 71, 100, 582
NlaIV GGNNCC 1 cut(s) 621
NsbI TGCGCA 1 cut(s) 360
NspI RCATGY 1 cut(s) 100
PfeI GAWTC 3 cut(s) 158, 165, 228
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 485
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 3 cut(s) 66, 519, 577
SaqAI TTAA 4 cut(s) 9, 191, 308, 510
Sau3AI GATC 2 cut(s) 70, 241
Sau96I GGNCC 1 cut(s) 485
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 35, 139, 180, 596
SfaNI GCATC 2 cut(s) 290, 394
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 3 cut(s) 66, 519, 577
Sse9I AATT 6 cut(s) 11, 47, 146, 278, 362, 568
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 596
TaqI TCGA 1 cut(s) 186
TasI AATT 6 cut(s) 11, 47, 146, 278, 362, 568
TfiI GAWTC 3 cut(s) 158, 165, 228
Tru1I TTAA 4 cut(s) 9, 191, 308, 510
Tru9I TTAA 4 cut(s) 9, 191, 308, 510
TscAI CASTG 1 cut(s) 177
TspDTI ATGAA 5 cut(s) 17, 171, 489, 561, 573
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 485
XceI RCATGY 1 cut(s) 100
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.