Rmu_sc0006598.1_g000015

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006598.1
OG0000414
Physical Location & Seq
Forward (+)
52137 .. 57728
5592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006598.1_g000015.1.cds

Sequence Viewer

Length: 1185 bp
atggttgctgataaaaggtacaaggagttacaagcagaatatgatatgtgcttcaggttgcctattctgaaaatgcatgtcaaaatgctatatgaagcaagaaaagtttacactaaactaatatttgaagagtttcaagatcaatttgaatcgtctcttgaagcttctataacagattgtgttgatgttgatggtggaaagatatatactgtgattagagatggctactctagagaacggcaagtgaagagagatagtgatgatatactctcttgtagttgcagattatttgagatgaaaggggttgtatgtaggcacattatcaaggtccttagagaagtgatgcaaatcaaagaaattcatgagcattatatcttaaaaagatggaccaaaaaggctcgagctgaaagtgttcaagacatgcatgagcgtgaaattcaaccagaccttaagttgcaacaagcctcttggtacagatctttatgttccacctacattagaatatcaagcagggcttctgaaaatgaaaaagcatacaaattagtcatgacaaatgcagagaagttagcaaaagaagttgaagaattgctacgatctgaaatgaatgctaatgtggatgagaatggtcatacaactcaatccactcctggacaactcaatgtagatagtaatgtggttactcctgttcaaatgaatagtgtatacaaggtgacttttgatccaacatgtaatgaagagaatgctactcttgatctaacaaacaatgcagatcaatttctggaacaagacttttgtgcatcttcacttagtcaggactggcttggcctgggcttggtggttgctgacttgggtgcggcggcgacatgcttgcgggctgcgcggggtctgctgcaaggttcggcattcgaggggtgtagcaggccgagtcttcagttgtctttgcttgagatggagatgtatggttggaaaagccggtccccggagctattcaactggtgcgtcgtcggggacgacggtggcggcaaaggagcagcgagtagtgatgcttctcctatgttagcttgggtttgggtctctgggcctgggctcaaccttgggctgatggggcaagggactattcctgctaggccagttttgaattggacttgggctcaagtcaaggcaatctgggccctaatgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

394

Amino Acids

44.59

Weight (kDa)

5.47

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 702
AccII CGCG 1 cut(s) 880
AciI CCGC 5 cut(s) 854, 857, 871, 880, 1020
AclWI GGATC 1 cut(s) 713
AcsI RAATTY 2 cut(s) 357, 435
AcuI CTGAAG 2 cut(s) 37, 914
AfaI GTAC 2 cut(s) 20, 473
AfiI CCNNNNNNNGG 2 cut(s) 832, 979
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 725
AjnI CCWGG 3 cut(s) 646, 825, 1081
AluBI AGCT 4 cut(s) 164, 404, 985, 1061
AluI AGCT 4 cut(s) 164, 404, 985, 1061
Alw26I GTCTC 2 cut(s) 159, 1078
AlwI GGATC 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 5 cut(s) 823, 920, 1079, 1127, 1170
ApaI GGGCCC 1 cut(s) 1174
ApeKI GCWGC 3 cut(s) 875, 889, 1031
ApoI RAATTY 2 cut(s) 357, 435
Asp700I GAANNNNTTC 2 cut(s) 132, 411
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 6 cut(s) 328, 387, 975, 1079, 1170, 1171
AsuC2I CCSGG 1 cut(s) 980
AsuHPI GGTGA 1 cut(s) 721
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 3 cut(s) 328, 387, 975
BaeGI GKGCMC 1 cut(s) 1174
BanII GRGCYC 3 cut(s) 1089, 1153, 1174
BarI GAAGNNNNNNTAC 4 cut(s) 573, 605, 1030, 1062
BbsI GAAGAC 1 cut(s) 920
BbvI GCAGC 3 cut(s) 862, 876, 1043
BccI CCATC 5 cut(s) 185, 215, 378, 943, 1096
BceAI ACGGC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 850, 884
BciT130I CCWGG 3 cut(s) 648, 827, 1083
BcnI CCSGG 1 cut(s) 980
BcoDI GTCTC 2 cut(s) 159, 1078
BfaI CTAG 2 cut(s) 231, 1125
BfrI CTTAAG 1 cut(s) 449
BglII AGATCT 1 cut(s) 476
BisI GCNGC 6 cut(s) 855, 858, 876, 890, 1021, 1032
BlsI GCNGC 6 cut(s) 856, 859, 877, 891, 1022, 1033
Bme1390I CCNGG 4 cut(s) 648, 827, 980, 1083
Bme18I GGWCC 3 cut(s) 328, 387, 975
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 6 cut(s) 328, 387, 975, 1079, 1170, 1171
BmiI GGNNCC 2 cut(s) 977, 1172
BmrFI CCNGG 4 cut(s) 648, 827, 980, 1083
BmsI GCATC 3 cut(s) 333, 806, 1033
BpiI GAAGAC 1 cut(s) 920
BpuEI CTTGAG 2 cut(s) 965, 1137
BpuMI CCSGG 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 1078
BsaJI CCNNGG 4 cut(s) 826, 978, 1082, 1093
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 979
Bse118I RCCGGY 1 cut(s) 972
Bse1I ACTGG 3 cut(s) 821, 998, 1130
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 3 cut(s) 648, 827, 1083
BseDI CCNNGG 4 cut(s) 826, 978, 1082, 1093
BseGI GGATG 1 cut(s) 622
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 832, 979
BseNI ACTGG 3 cut(s) 821, 998, 1130
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 3 cut(s) 862, 876, 1043
Bsh1236I CGCG 1 cut(s) 880
BshFI GGCC 5 cut(s) 825, 922, 1081, 1129, 1172
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 2 cut(s) 973, 980
BslFI GGGAC 3 cut(s) 961, 1022, 1126
BslI CCNNNNNNNGG 2 cut(s) 832, 979
BsmAI GTCTC 2 cut(s) 159, 1078
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 3 cut(s) 961, 1022, 1126
BsmI GAATGC 3 cut(s) 610, 745, 902
BsnI GGCC 5 cut(s) 825, 922, 1081, 1129, 1172
Bso31I GGTCTC 1 cut(s) 1078
BsoBI CYCGRG 1 cut(s) 399
Bsp120I GGGCCC 1 cut(s) 1170
Bsp1286I GDGCHC 3 cut(s) 1089, 1153, 1174
Bsp143I GATC 6 cut(s) 139, 476, 593, 718, 751, 769
BspACI CCGC 5 cut(s) 854, 857, 871, 880, 1020
BspANI GGCC 5 cut(s) 825, 922, 1081, 1129, 1172
BspFNI CGCG 1 cut(s) 880
BspHI TCATGA 2 cut(s) 361, 546
BspLI GGNNCC 2 cut(s) 977, 1172
BspPI GGATC 1 cut(s) 713
BspTI CTTAAG 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 1078
BsrFI RCCGGY 1 cut(s) 972
BsrI ACTGG 3 cut(s) 821, 998, 1130
BssAI RCCGGY 1 cut(s) 972
BssECI CCNNGG 4 cut(s) 826, 978, 1082, 1093
BssMI GATC 6 cut(s) 139, 476, 593, 718, 751, 769
BssNAI GTATAC 1 cut(s) 703
BssT1I CCWWGG 1 cut(s) 1093
Bst1107I GTATAC 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 648, 827, 1083
Bst4CI ACNGT 2 cut(s) 211, 1016
Bst6I CTCTTC 3 cut(s) 123, 242, 729
BstAFI CTTAAG 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 869, 873, 920
BstDEI CTNAG 2 cut(s) 332, 806
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 880
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 6 cut(s) 142, 479, 596, 721, 754, 772
BstMAI GTCTC 2 cut(s) 159, 1078
BstMBI GATC 6 cut(s) 139, 476, 593, 718, 751, 769
BstMWI GCNNNNNNNGC 4 cut(s) 877, 886, 1105, 1169
BstNI CCWGG 3 cut(s) 648, 827, 1083
BstNSI RCATGY 4 cut(s) 80, 424, 729, 867
BstSCI CCNGG 4 cut(s) 646, 825, 978, 1081
BstSLI GKGCMC 1 cut(s) 1174
BstUI CGCG 1 cut(s) 880
BstV1I GCAGC 3 cut(s) 862, 876, 1043
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BstZ17I GTATAC 1 cut(s) 703
BsuRI GGCC 5 cut(s) 825, 922, 1081, 1129, 1172
BtsCI GGATG 1 cut(s) 622
Cac8I GCNNGC 3 cut(s) 869, 873, 920
CciI TCATGA 2 cut(s) 361, 546
CfoI GCGC 1 cut(s) 880
Cfr10I RCCGGY 1 cut(s) 972
Cfr13I GGNCC 6 cut(s) 328, 387, 975, 1079, 1170, 1171
CseI GACGC 1 cut(s) 988
Csp6I GTAC 2 cut(s) 19, 472
CviAII CATG 7 cut(s) 77, 362, 421, 425, 547, 726, 864
CviQI GTAC 2 cut(s) 19, 472
DdeI CTNAG 2 cut(s) 332, 806
DpnI GATC 6 cut(s) 141, 478, 595, 720, 753, 771
DpnII GATC 6 cut(s) 139, 476, 593, 718, 751, 769
Eam1104I CTCTTC 3 cut(s) 123, 242, 729
EarI CTCTTC 3 cut(s) 123, 242, 729
Eco130I CCWWGG 1 cut(s) 1093
Eco24I GRGCYC 3 cut(s) 1089, 1153, 1174
Eco31I GGTCTC 1 cut(s) 1078
Eco47I GGWCC 3 cut(s) 328, 387, 975
Eco57I CTGAAG 2 cut(s) 37, 914
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 2 cut(s) 328, 1171
EcoRII CCWGG 3 cut(s) 646, 825, 1081
EcoT14I CCWWGG 1 cut(s) 1093
EcoT22I ATGCAT 2 cut(s) 78, 426
EcoT38I GRGCYC 3 cut(s) 1089, 1153, 1174
ErhI CCWWGG 1 cut(s) 1093
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 7 cut(s) 80, 365, 424, 428, 550, 729, 867
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 3 cut(s) 961, 1022, 1126
FatI CATG 7 cut(s) 76, 361, 420, 424, 546, 725, 863
FauI CCCGC 2 cut(s) 864, 873
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 6 cut(s) 855, 858, 876, 890, 1021, 1032
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 3 cut(s) 1089, 1153, 1174
Fsp4HI GCNGC 6 cut(s) 855, 858, 876, 890, 1021, 1032
FspBI CTAG 2 cut(s) 231, 1125
GlaI GCGC 1 cut(s) 879
GluI GCNGC 6 cut(s) 855, 858, 876, 890, 1021, 1032
HaeIII GGCC 5 cut(s) 825, 922, 1081, 1129, 1172
HapII CCGG 2 cut(s) 973, 980
HgaI GACGC 1 cut(s) 988
HhaI GCGC 1 cut(s) 880
Hin1II CATG 7 cut(s) 80, 365, 424, 428, 550, 729, 867
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 2 cut(s) 149, 925
HpaII CCGG 2 cut(s) 973, 980
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 2 cut(s) 109, 703
Hpy188I TCNGA 3 cut(s) 69, 520, 598
Hpy188III TCNNGA 9 cut(s) 137, 158, 231, 362, 416, 547, 749, 779, 812
Hpy8I GTNNAC 2 cut(s) 109, 703
Hpy99I CGWCG 3 cut(s) 1004, 1007, 1016
HpyCH4III ACNGT 2 cut(s) 211, 1016
HpyCH4V TGCA 9 cut(s) 76, 282, 346, 424, 457, 557, 767, 797, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 877, 886, 1105, 1169
HpyF3I CTNAG 2 cut(s) 332, 806
Hsp92II CATG 7 cut(s) 80, 365, 424, 428, 550, 729, 867
HspAI GCGC 1 cut(s) 878
Kzo9I GATC 6 cut(s) 139, 476, 593, 718, 751, 769
LmnI GCTCC 2 cut(s) 982, 1028
Lsp1109I GCAGC 3 cut(s) 862, 876, 1043
LweI GCATC 3 cut(s) 333, 806, 1033
MaeI CTAG 2 cut(s) 231, 1125
MaeIII GTNAC 3 cut(s) 27, 676, 709
MalI GATC 6 cut(s) 141, 478, 595, 720, 753, 771
MboI GATC 6 cut(s) 139, 476, 593, 718, 751, 769
MboII GAAGA 6 cut(s) 140, 259, 593, 746, 792, 920
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 3 cut(s) 1089, 1153, 1174
MluCI AATT 7 cut(s) 143, 357, 435, 539, 584, 773, 1138
MlyI GAGTC 1 cut(s) 934
MmeI TCCRAC 2 cut(s) 746, 944
MnlI CCTC 2 cut(s) 475, 901
Mph1103I ATGCAT 2 cut(s) 78, 426
MroXI GAANNNNTTC 2 cut(s) 132, 411
MseI TTAA 2 cut(s) 377, 450
MslI CAYNNNNRTG 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 2 cut(s) 973, 980
MspR9I CCNGG 4 cut(s) 648, 827, 980, 1083
Mva1269I GAATGC 3 cut(s) 610, 745, 902
MvaI CCWGG 3 cut(s) 648, 827, 1083
MvnI CGCG 1 cut(s) 880
MwoI GCNNNNNNNGC 4 cut(s) 877, 886, 1105, 1169
NciI CCSGG 1 cut(s) 980
NdeII GATC 6 cut(s) 139, 476, 593, 718, 751, 769
NlaIII CATG 7 cut(s) 80, 365, 424, 428, 550, 729, 867
NlaIV GGNNCC 2 cut(s) 977, 1172
NmeAIII GCCGAG 1 cut(s) 948
NmuCI GTSAC 1 cut(s) 709
NsiI ATGCAT 2 cut(s) 78, 426
NspI RCATGY 4 cut(s) 80, 424, 729, 867
PaeR7I CTCGAG 1 cut(s) 399
PagI TCATGA 2 cut(s) 361, 546
PciI ACATGT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 1008
PctI GAATGC 3 cut(s) 610, 745, 902
PdmI GAANNNNTTC 2 cut(s) 132, 411
PfeI GAWTC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 646
PkrI GCNGC 6 cut(s) 856, 859, 877, 891, 1022, 1033
PleI GAGTC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 933
PpuMI RGGWCCY 1 cut(s) 328
PscI ACATGT 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 3 cut(s) 646, 825, 1081
PspGI CCWGG 3 cut(s) 646, 825, 1081
PspN4I GGNNCC 2 cut(s) 977, 1172
PspOMI GGGCCC 1 cut(s) 1170
PspPI GGNCC 6 cut(s) 328, 387, 975, 1079, 1170, 1171
PspPPI RGGWCCY 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 399
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 20, 473
RsaNI GTAC 2 cut(s) 19, 472
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 2 cut(s) 377, 450
SatI GCNGC 6 cut(s) 855, 858, 876, 890, 1021, 1032
Sau3AI GATC 6 cut(s) 139, 476, 593, 718, 751, 769
Sau96I GGNCC 6 cut(s) 328, 387, 975, 1079, 1170, 1171
SchI GAGTC 1 cut(s) 934
ScrFI CCNGG 4 cut(s) 648, 827, 980, 1083
SduI GDGCHC 3 cut(s) 1089, 1153, 1174
SfaNI GCATC 3 cut(s) 333, 806, 1033
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 3 cut(s) 328, 387, 975
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 4 cut(s) 399, 449, 944, 1152
SmoI CTYRAG 4 cut(s) 399, 449, 944, 1152
Sse9I AATT 7 cut(s) 143, 357, 435, 539, 584, 773, 1138
SsiI CCGC 5 cut(s) 854, 857, 871, 880, 1020
SspI AATATT 1 cut(s) 123
SspMI CTAG 2 cut(s) 231, 1125
StyD4I CCNGG 4 cut(s) 646, 825, 978, 1081
StyI CCWWGG 1 cut(s) 1093
TaaI ACNGT 2 cut(s) 211, 1016
TaqI TCGA 2 cut(s) 400, 906
TasI AATT 7 cut(s) 143, 357, 435, 539, 584, 773, 1138
TauI GCSGC 3 cut(s) 857, 860, 1023
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 377, 450
Tru9I TTAA 2 cut(s) 377, 450
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 3 cut(s) 875, 889, 1031
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 7 cut(s) 108, 311, 350, 540, 617, 707, 747
Vha464I CTTAAG 1 cut(s) 449
VpaK11BI GGWCC 3 cut(s) 328, 387, 975
XapI RAATTY 2 cut(s) 357, 435
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 4 cut(s) 80, 424, 729, 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 1137
XhoI CTCGAG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 2 cut(s) 132, 411
XspI CTAG 2 cut(s) 231, 1125
Zsp2I ATGCAT 2 cut(s) 78, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.