Rmu_ssc0000317.1_g000004

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000317.1
OG0000414
Physical Location & Seq
Forward (+)
10409 .. 11317
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000317.1_g000004.1.cds

Sequence Viewer

Length: 909 bp
atggttgctgataaaaggtacaaggagttacaagcagaatatgatatgtgcttcaggttgcctattctgaaaatgcatgtcaaaatgctatatgaagcaagaaaagtttacactaaactaatatttgaagagtttcaagatcataggttgcgtattctgaaaatgcatgtcaaaatgctatatgaagcaagaaaagtttacactaaactaatatttgaagagtttcaagatcaatttgaatcgtctcttgaagcgtctataacagattgtgttgatgttgatggtggaaagatatatgctgtgattagagatggctactctagagaacggcaagtcaagagagatagtgatgatatactctcttgtagttgcagattatttgagatgaaaggggttgtatgtaggcacattatcaaggtccttagagaagtgatgcaagtcaaagaaattcctgagcattatatcttaaaaagatggaccaaaaaagctcgagctgaaagtgatcaagacatgcacgggcgtgaaattcaacccgaccctaagttgcaacaagccacttggtacagatctttatgttccacctacattagaatatcaagcagggcttctgaaaatgaaaaagcatacaaattagtcatgacaaatgcagagaagttagcaaaagaagttgaagaattgctacgatctgaaatgaatgctaatgtggatgagaatagtcatacaactcaatccactcctactggacaactcaatgtatatggtaatgtggtgaatgcaaaagggctaaagaagaaggaaacatctaaaggaagaaaacagagaatcaagagtcaagtagagataagcatgaacaaaaataaaaaacagaggcaacccagtaaaaaagcaatggaggtattcatgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

302

Amino Acids

35.63

Weight (kDa)

9.44

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 447, 525
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 2 cut(s) 20, 563
AgsI TTSAA 8 cut(s) 128, 137, 218, 227, 239, 251, 530, 671
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 2 cut(s) 488, 494
AluI AGCT 2 cut(s) 488, 494
Alw26I GTCTC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 489
ApoI RAATTY 2 cut(s) 447, 525
Asp700I GAANNNNTTC 2 cut(s) 132, 222
AspS9I GGNCC 2 cut(s) 418, 477
AsuHPI GGTGA 1 cut(s) 781
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 2 cut(s) 418, 477
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BccI CCATC 3 cut(s) 275, 305, 468
BceAI ACGGC 1 cut(s) 344
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 566
Bme18I GGWCC 2 cut(s) 418, 477
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 418, 477
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 870
Bpu10I CCTNAGC 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 745, 876
Bse3DI GCAATG 1 cut(s) 894
BseGI GGATG 1 cut(s) 712
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 2 cut(s) 745, 876
BsiHKCI CYCGRG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 249
BsmBI CGTCTC 1 cut(s) 249
BsmI GAATGC 2 cut(s) 700, 778
BsoBI CYCGRG 1 cut(s) 489
Bsp143I GATC 5 cut(s) 139, 229, 502, 566, 683
BspCNI CTCAG 1 cut(s) 445
BspHI TCATGA 2 cut(s) 636, 900
BsrDI GCAATG 1 cut(s) 894
BsrI ACTGG 2 cut(s) 745, 876
BssMI GATC 5 cut(s) 139, 229, 502, 566, 683
Bst6I CTCTTC 2 cut(s) 123, 213
BstDEI CTNAG 3 cut(s) 422, 453, 540
BstF5I GGATG 1 cut(s) 712
BstKTI GATC 5 cut(s) 142, 232, 505, 569, 686
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 5 cut(s) 139, 229, 502, 566, 683
BstNSI RCATGY 3 cut(s) 80, 170, 514
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
BtsCI GGATG 1 cut(s) 712
CciI TCATGA 2 cut(s) 636, 900
Cfr13I GGNCC 2 cut(s) 418, 477
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 19, 562
CviAII CATG 6 cut(s) 77, 167, 511, 637, 847, 901
CviJI RGCY 6 cut(s) 315, 488, 494, 554, 605, 784
CviKI_1 RGCY 6 cut(s) 315, 488, 494, 554, 605, 784
CviQI GTAC 2 cut(s) 19, 562
DdeI CTNAG 3 cut(s) 422, 453, 540
DpnI GATC 5 cut(s) 141, 231, 504, 568, 685
DpnII GATC 5 cut(s) 139, 229, 502, 566, 683
Eam1104I CTCTTC 2 cut(s) 123, 213
EarI CTCTTC 2 cut(s) 123, 213
Eco47I GGWCC 2 cut(s) 418, 477
Eco57I CTGAAG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 418
EcoT22I ATGCAT 2 cut(s) 78, 168
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 6 cut(s) 80, 170, 514, 640, 850, 904
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FatI CATG 6 cut(s) 76, 166, 510, 636, 846, 900
FbaI TGATCA 1 cut(s) 502
FokI GGATG 1 cut(s) 719
FspBI CTAG 1 cut(s) 321
HgaI GACGC 1 cut(s) 243
Hin1II CATG 6 cut(s) 80, 170, 514, 640, 850, 904
HinfI GANTC 3 cut(s) 239, 822, 829
HphI GGTGA 1 cut(s) 781
Hpy166II GTNNAC 2 cut(s) 109, 199
Hpy188I TCNGA 4 cut(s) 69, 159, 610, 688
Hpy8I GTNNAC 2 cut(s) 109, 199
HpyAV CCTTC 1 cut(s) 787
HpyCH4V TGCA 8 cut(s) 76, 166, 372, 436, 514, 547, 647, 776
HpyF3I CTNAG 3 cut(s) 422, 453, 540
Hsp92II CATG 6 cut(s) 80, 170, 514, 640, 850, 904
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 139, 229, 502, 566, 683
LpnPI CCDG 5 cut(s) 40, 465, 586, 726, 889
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 27
MalI GATC 5 cut(s) 141, 231, 504, 568, 685
MboI GATC 5 cut(s) 139, 229, 502, 566, 683
MboII GAAGA 5 cut(s) 140, 230, 683, 802, 822
MflI RGATCY 1 cut(s) 566
MluCI AATT 5 cut(s) 233, 447, 525, 629, 674
MlyI GAGTC 1 cut(s) 838
MnlI CCTC 2 cut(s) 861, 886
Mph1103I ATGCAT 2 cut(s) 78, 168
MroXI GAANNNNTTC 2 cut(s) 132, 222
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 1 cut(s) 519
Mva1269I GAATGC 2 cut(s) 700, 778
NdeII GATC 5 cut(s) 139, 229, 502, 566, 683
NlaIII CATG 6 cut(s) 80, 170, 514, 640, 850, 904
NsiI ATGCAT 2 cut(s) 78, 168
NspI RCATGY 3 cut(s) 80, 170, 514
OliI CACNNNNGTG 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 489
PagI TCATGA 2 cut(s) 636, 900
PctI GAATGC 2 cut(s) 700, 778
PdmI GAANNNNTTC 2 cut(s) 132, 222
PfeI GAWTC 2 cut(s) 239, 822
PleI GAGTC 1 cut(s) 837
PpsI GAGTC 1 cut(s) 837
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
PspPI GGNCC 2 cut(s) 418, 477
PspPPI RGGWCCY 1 cut(s) 418
PspXI VCTCGAGB 1 cut(s) 489
PsuI RGATCY 1 cut(s) 566
RsaI GTAC 2 cut(s) 20, 563
RsaNI GTAC 2 cut(s) 19, 562
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 1 cut(s) 467
Sau3AI GATC 5 cut(s) 139, 229, 502, 566, 683
Sau96I GGNCC 2 cut(s) 418, 477
SchI GAGTC 1 cut(s) 838
SetI ASST 8 cut(s) 20, 59, 149, 420, 490, 496, 584, 897
SfaNI GCATC 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 489
SinI GGWCC 2 cut(s) 418, 477
SlaI CTCGAG 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 5 cut(s) 233, 447, 525, 629, 674
SspI AATATT 2 cut(s) 123, 213
SspMI CTAG 1 cut(s) 321
TaqI TCGA 1 cut(s) 490
TasI AATT 5 cut(s) 233, 447, 525, 629, 674
TfiI GAWTC 2 cut(s) 239, 822
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TspDTI ATGAA 7 cut(s) 108, 198, 401, 630, 707, 863, 889
VpaK11BI GGWCC 2 cut(s) 418, 477
XapI RAATTY 2 cut(s) 447, 525
XbaI TCTAGA 1 cut(s) 320
XceI RCATGY 3 cut(s) 80, 170, 514
XhoI CTCGAG 1 cut(s) 489
XmnI GAANNNNTTC 2 cut(s) 132, 222
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 2 cut(s) 78, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.