Rmu_sc0001634.1_g000004

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001634.1
OG0000414
Physical Location & Seq
Forward (+)
21716 .. 22552
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001634.1_g000004.1.cds

Sequence Viewer

Length: 837 bp
atggaggctatggatagagatgactcgactagtccagattacaagccaaggaatggtatggagtttgactcgaaagaattagcatatgagttttataacatgtatgagcgaagagttgggtttagtattagaagacatacacattacaagaaccagcattctagtaagctcatctcaagaatatttgtttgttctaaagaaggtttatgtacaatagataagcgagaccatttgactaagaatcctcgagcgaagacacgaacaagttgtgatgctaaaatgatcattaagttggataaatcaagtggtaggtacaaagttgttcaatttgaagaaactcacagccatgatcttgtaatacaagagtgtgctcacatgctaccatctcaacaaaatgtaacttcttcacaaggagctgagatggaattggtacaagattctggaatcccactgaagctttcattcgagttcatgggcagagaagttggtggaagaaaggctcttggattcactaaacaagatcagaaaaattatcttcaatctaaaaggcaaaagaaattggcatatggagaagcaggatgcttattaaaatacttccaaaatcaagccttagaaaatccctcatttttctatgctgtgaaattggatagtgatgagcaaataacaaatattttttgggctgatgctaggatgatacttgattatggtttatttggtgatgttgtgagttttgacactacatacagaactaatgaagtcaatcgtctatttggagtatttgtgggatttaatcatcatcgtgaaactgtaatctttgggggcagcaatgatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

278

Amino Acids

32.1

Weight (kDa)

8.17

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 3 cut(s) 211, 314, 432
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 326, 332, 539
AhlI ACTAGT 1 cut(s) 29
AluBI AGCT 3 cut(s) 169, 416, 457
AluI AGCT 3 cut(s) 169, 416, 457
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 822
AsuHPI GGTGA 1 cut(s) 728
AvaI CYCGRG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 139, 260
Bbv12I GWGCWC 1 cut(s) 373
BccI CCATC 2 cut(s) 391, 415
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 219
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 3 cut(s) 30, 162, 687
BisI GCNGC 1 cut(s) 823
BlsI GCNGC 1 cut(s) 824
BmeT110I CYCGRG 1 cut(s) 246
BmsI GCATC 3 cut(s) 262, 569, 673
BpiI GAAGAC 2 cut(s) 139, 260
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpuEI CTTGAG 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 832
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 584, 696
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 282, 349, 520
BspCNI CTCAG 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 832
BsrGI TGTACA 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 282, 349, 520
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 808
Bst6I CTCTTC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 237, 417, 610
BstF5I GGATG 2 cut(s) 584, 696
BstKTI GATC 3 cut(s) 285, 352, 523
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 3 cut(s) 282, 349, 520
BstNSI RCATGY 2 cut(s) 103, 379
BstV2I GAAGAC 2 cut(s) 139, 260
BtsCI GGATG 2 cut(s) 584, 696
BtsIMutI CAGTG 1 cut(s) 449
Csp6I GTAC 3 cut(s) 210, 313, 431
CviAII CATG 4 cut(s) 100, 347, 376, 472
CviJI RGCY 9 cut(s) 8, 46, 169, 345, 416, 457, 500, 608, 680
CviKI_1 RGCY 9 cut(s) 8, 46, 169, 345, 416, 457, 500, 608, 680
CviQI GTAC 3 cut(s) 210, 313, 431
DdeI CTNAG 3 cut(s) 237, 417, 610
DpnI GATC 3 cut(s) 284, 351, 522
DpnII GATC 3 cut(s) 282, 349, 520
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 103, 350, 379, 475
FatI CATG 4 cut(s) 99, 346, 375, 471
FauNDI CATATG 2 cut(s) 85, 565
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 823
FokI GGATG 2 cut(s) 591, 703
Fsp4HI GCNGC 1 cut(s) 823
FspBI CTAG 3 cut(s) 30, 162, 687
GluI GCNGC 1 cut(s) 823
Hin1II CATG 4 cut(s) 103, 350, 379, 475
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 6 cut(s) 23, 68, 241, 437, 444, 507
HphI GGTGA 1 cut(s) 728
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 4 cut(s) 35, 177, 441, 800
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 808
HpyF3I CTNAG 3 cut(s) 237, 417, 610
Hsp92II CATG 4 cut(s) 103, 350, 379, 475
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 282, 349, 520
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 4 cut(s) 48, 167, 426, 561
LweI GCATC 3 cut(s) 262, 569, 673
MaeI CTAG 3 cut(s) 30, 162, 687
MaeIII GTNAC 1 cut(s) 397
MalI GATC 3 cut(s) 284, 351, 522
MboI GATC 3 cut(s) 282, 349, 520
MboII GAAGA 7 cut(s) 123, 144, 265, 344, 396, 504, 527
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 6 cut(s) 77, 326, 425, 529, 557, 641
MlyI GAGTC 2 cut(s) 17, 62
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 2 cut(s) 255, 631
MseI TTAA 3 cut(s) 288, 587, 789
MslI CAYNNNNRTG 2 cut(s) 345, 798
Mva1269I GAATGC 1 cut(s) 157
NdeI CATATG 2 cut(s) 85, 565
NdeII GATC 3 cut(s) 282, 349, 520
NlaIII CATG 4 cut(s) 103, 350, 379, 475
NspI RCATGY 2 cut(s) 103, 379
PaeR7I CTCGAG 1 cut(s) 246
PciI ACATGT 1 cut(s) 99
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 4 cut(s) 241, 437, 444, 507
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 1 cut(s) 824
PleI GAGTC 2 cut(s) 17, 62
PpsI GAGTC 2 cut(s) 17, 62
PscI ACATGT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 246
RsaI GTAC 3 cut(s) 211, 314, 432
RsaNI GTAC 3 cut(s) 210, 313, 431
RseI CAYNNNNRTG 2 cut(s) 345, 798
SaqAI TTAA 3 cut(s) 288, 587, 789
SatI GCNGC 1 cut(s) 823
Sau3AI GATC 3 cut(s) 282, 349, 520
SchI GAGTC 2 cut(s) 17, 62
SduI GDGCHC 1 cut(s) 373
SetI ASST 5 cut(s) 171, 205, 314, 418, 459
SfaNI GCATC 3 cut(s) 262, 569, 673
Sfr274I CTCGAG 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 345, 798
SmlI CTYRAG 2 cut(s) 175, 246
SmoI CTYRAG 2 cut(s) 175, 246
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 6 cut(s) 77, 326, 425, 529, 557, 641
SspI AATATT 2 cut(s) 183, 670
SspMI CTAG 3 cut(s) 30, 162, 687
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 808
TaqI TCGA 4 cut(s) 26, 71, 247, 465
TasI AATT 6 cut(s) 77, 326, 425, 529, 557, 641
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 4 cut(s) 241, 437, 444, 507
Tru1I TTAA 3 cut(s) 288, 587, 789
Tru9I TTAA 3 cut(s) 288, 587, 789
TscAI CASTG 1 cut(s) 456
TseI GCWGC 1 cut(s) 822
TspDTI ATGAA 3 cut(s) 450, 460, 768
TspRI CASTG 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 53
XceI RCATGY 2 cut(s) 103, 379
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 3 cut(s) 30, 162, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.