FvH4_1g22181

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000414
Physical Location & Seq
Forward (+)
14128078 .. 14130154
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22181.t1

Sequence Viewer

Length: 390 bp
ATGTCGGGAGATTCCACTCTAGGACAAGGATCCTTTCATCGACCACCATCAATCATGTCAGCTATGGCGTTAAGAGACATAACAAATATTAGTGGAGAATCTAGCTTGGCTGACACAAGTTGCAAACCGAAATTCGGTATGGAATTTGACTCTGAAGAAGCTGCTTATATATTTTACAATGAGTATGCAAGGAAGATGAGATTCAGTGTTAGAAAAGAACAGGTGGTGAAAAACAAGAAAACCGGTGAGGTGTTATCAAAGTTCATAGACAGCTATGAAGAAGAATATGAGTTTCTAGCTGTTTGGGATGCGATGCTCACGGAGTATAATGTGTATGGAGATGAATGGTTCAAAAGAATTTTTGAAGTGGACAAGAAAAGCAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

5.3

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 24, 37
AcsI RAATTY 3 cut(s) 131, 143, 357
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 352, 365
AluBI AGCT 5 cut(s) 62, 105, 161, 273, 299
AluI AGCT 5 cut(s) 62, 105, 161, 273, 299
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 24, 37
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 3 cut(s) 131, 143, 357
AsiGI ACCGGT 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 238, 257
BamHI GGATCC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 3 cut(s) 20, 102, 296
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 2 cut(s) 298, 303
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 242
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 148
BshTI ACCGGT 1 cut(s) 242
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 31
BspPI GGATC 2 cut(s) 24, 37
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssMI GATC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 62, 105, 110, 161, 273, 299
CviKI_1 RGCY 6 cut(s) 62, 105, 110, 161, 273, 299
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 174
FaeI CATG 1 cut(s) 58
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 3 cut(s) 20, 102, 296
GluI GCNGC 1 cut(s) 162
HapII CCGG 1 cut(s) 243
Hin1II CATG 1 cut(s) 58
HinfI GANTC 4 cut(s) 11, 98, 149, 201
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 238, 257
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4V TGCA 2 cut(s) 123, 188
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 206, 256
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 298, 303
MaeI CTAG 3 cut(s) 20, 102, 296
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 4 cut(s) 167, 205, 290, 293
MflI RGATCY 1 cut(s) 29
MluCI AATT 3 cut(s) 131, 143, 357
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 241
MseI TTAA 1 cut(s) 71
MspI CCGG 1 cut(s) 243
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 11, 98, 201
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 29
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 29
SchI GAGTC 1 cut(s) 143
SetI ASST 7 cut(s) 64, 107, 163, 225, 252, 275, 301
SfaNI GCATC 2 cut(s) 298, 303
Sse9I AATT 3 cut(s) 131, 143, 357
SspI AATATT 1 cut(s) 88
SspMI CTAG 3 cut(s) 20, 102, 296
TaqI TCGA 1 cut(s) 40
TasI AATT 3 cut(s) 131, 143, 357
TfiI GAWTC 3 cut(s) 11, 98, 201
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 26, 253, 291, 357
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 1 cut(s) 211
XapI RAATTY 3 cut(s) 131, 143, 357
XspI CTAG 3 cut(s) 20, 102, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.