Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000414

Physical Location & Seq

Genomic Coordinates Reverse (-)

52863523 .. 52872619

Gene Structure 9097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG357500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTGGACAAGCACTTAGAGAAGTCCTCCCCATCCACATCCAGAGCTTTGGCCAATAGTAAAGACAAAGATAGGCTCTTTGTGCCCTCCACTTCCGCCAGAAAGTCTCAGCTCGATCACCGTGCCGCCGCCGCTGCCACCGCCTCGCTCGCCAAGAACAAATGCTCCGATGAGAGATCTAATCAAAATTTCAGAACTTTAGCTTTGATTCTTCTATCCATCTCACTTTGCCTGCATTCCATTACGACATTTTACTGTACAAGGAATTGGTTGCAGATGGATAATGCATTGGGTGCAACATATGTTAATGTTACTCCTGATCAAATGAATGATGTATACAAGGTGACTTTTGATCCAAGATGCAATGAAGAGCATGCTACTCTTGATCTAACAAACAATGCAGAGAATGATGCTTCTGTTATAAAAAGTAATGCAGATCAATTTCTGGAAGAAGACTTTTGTGCATCTTCACTTAGTCAGATATTGAGAAGATTTAAAGTTTGCAGTTGGTACTTTTATGGTTTTGTTGTGCAGGCTTCTGCTTCATTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

184

Amino Acids

20.64

Weight (kDa)

6.88

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis	RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata	RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora	Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii	Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa	Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha	Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana	Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	5 cut(s)	96, 126, 129, 132, 141
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	2 cut(s)	259, 512
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	47, 112, 203
AluI	AGCT	3 cut(s)	47, 112, 203
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	110, 355
BaeGI	GKGCMC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	40, 227, 271
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	4 cut(s)	126, 129, 132, 135
BlsI	GCNGC	4 cut(s)	127, 130, 133, 136
BmsI	GCATC	3 cut(s)	350, 400, 473
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse3DI	GCAATG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	32, 38
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	257
Bsp143I	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
BspACI	CCGC	5 cut(s)	96, 126, 129, 132, 141
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	257
BssMI	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
BssNAI	GTATAC	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	122, 257
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	150, 233, 375, 534
BstDEI	CTNAG	3 cut(s)	16, 108, 473
BstF5I	GGATG	2 cut(s)	32, 38
BstKTI	GATC	6 cut(s)	118, 179, 322, 355, 388, 439
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 82, 131, 134, 140, 149, 293
BstNSI	RCATGY	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	176
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	176
BstZ17I	GTATAC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	32, 38
Cac8I	GCNNGC	4 cut(s)	150, 233, 375, 534
Csp6I	GTAC	2 cut(s)	258, 511
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	6 cut(s)	47, 53, 76, 112, 203, 536
CviKI_1	RGCY	6 cut(s)	47, 53, 76, 112, 203, 536
CviQI	GTAC	2 cut(s)	258, 511
DdeI	CTNAG	3 cut(s)	16, 108, 473
DpnI	GATC	6 cut(s)	117, 178, 321, 354, 387, 438
DpnII	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	1 cut(s)	377
FaiI	YATR	6 cut(s)	301, 303, 337, 375, 422, 519
FatI	CATG	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	126, 129, 132, 135
FokI	GGATG	2 cut(s)	19, 25
Fsp4HI	GCNGC	4 cut(s)	126, 129, 132, 135
GluI	GCNGC	4 cut(s)	126, 129, 132, 135
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	377
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	2 cut(s)	110, 355
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	169, 194, 480
Hpy188III	TCNNGA	4 cut(s)	42, 317, 383, 446
Hpy8I	GTNNAC	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	122, 257
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 82, 131, 134, 140, 149, 293
HpyF3I	CTNAG	3 cut(s)	16, 108, 473
Hsp92II	CATG	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	6 cut(s)	55, 112, 245, 330, 431, 518
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	3 cut(s)	350, 400, 473
MaeIII	GTNAC	2 cut(s)	310, 343
MalI	GATC	6 cut(s)	117, 178, 321, 354, 387, 438
MboI	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
MboII	GAAGA	6 cut(s)	203, 380, 459, 461, 464, 501
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	3 cut(s)	187, 265, 440
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	3 cut(s)	37, 97, 154
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	306, 495
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	7 cut(s)	10, 82, 131, 134, 140, 149, 293
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
NlaIII	CATG	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	363
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	127, 130, 133, 136
PsiI	TTATAA	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	2 cut(s)	259, 512
RsaNI	GTAC	2 cut(s)	258, 511
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	306, 495
SatI	GCNGC	4 cut(s)	126, 129, 132, 135
Sau3AI	GATC	6 cut(s)	115, 176, 319, 352, 385, 436
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	4 cut(s)	49, 114, 205, 345
SfaNI	GCATC	3 cut(s)	350, 400, 473
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	3 cut(s)	187, 265, 440
SsiI	CCGC	5 cut(s)	96, 126, 129, 132, 141
TaaI	ACNGT	2 cut(s)	122, 257
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	187, 265, 440
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	3 cut(s)	128, 131, 134
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	306, 495
Tru9I	TTAA	2 cut(s)	306, 495
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	341, 381, 534
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.