RLG00000021902

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
79155264 .. 79157572
2309 bp
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UTR
Exon/CDS
Intron
RLM00000021902

Sequence Viewer

Length: 618 bp
ATGAATGAAGCCAATGTAATGGAAGATAAGAAATTGACTATAGCTGAGCGATATAGAACAGCTTGCCCTATATTAGTTGATATTGCATCTCGAGCATCTGGAGATGAAAAAGCCTTTGAATTGGTAATGAAAGTCACACATGAGTTAAGAAAACAGGTTGAAGACATCTTCTTGGACAACTCAACAACGAGTATTGATGAACTGCATAATTCTTTGCAAGGTGGGGATGAGAGGATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAGAAGGCAAAAGGTTTGAAGAAGAAAAACAGTTGTAAAGGTCGCAAAAAACGCCCTAAGGCTTGGCATGAGAATATAGGCAAGGGAAAGAAAAAATCTTCTAGGAAAGATAATTCAATTCAAGAATCAAATAAGGATCAAGAAGCTCAACCATCAAGAAAGAGGAATAAGAAATTGTCTAGCAAGGATCAATCAGTACCTCAACAATCCCAGAATCAAGAAGCTGAACCTTCAAGAAAGAGAAATAAGAAATCCTCTACAGATCAATCACTACGTCAAGACTCTCAGGCGAGTTTCCATGGAAGCACAGAGCAAAGCAGAGCAGGCTTGGACGGCAAGCAGAGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

9.67

Isoelectric Point (pI)

73.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 411, 462
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 465
AgsI TTSAA 8 cut(s) 119, 161, 242, 257, 286, 384, 389, 501
AluBI AGCT 5 cut(s) 44, 62, 261, 413, 491
AluI AGCT 5 cut(s) 44, 62, 261, 413, 491
AlwI GGATC 2 cut(s) 411, 462
Ama87I CYCGRG 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 168
BccI CCATC 2 cut(s) 229, 427
BceAI ACGGC 1 cut(s) 616
BfaI CTAG 2 cut(s) 369, 447
BfmI CTRYAG 2 cut(s) 39, 525
BlpI GCTNAGC 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 90
BmsI GCATC 2 cut(s) 95, 104
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 565
Bse21I CCTNAGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 2 cut(s) 232, 240
BseMII CTCAG 2 cut(s) 36, 566
BsiHKCI CYCGRG 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 3 cut(s) 403, 454, 529
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 565
BspCNI CTCAG 2 cut(s) 37, 565
BspPI GGATC 2 cut(s) 411, 462
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 3 cut(s) 403, 454, 529
BssT1I CCWWGG 1 cut(s) 565
Bst4CI ACNGT 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 64, 592, 605
BstDEI CTNAG 3 cut(s) 45, 324, 552
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 232, 240
BstKTI GATC 3 cut(s) 406, 457, 532
BstMBI GATC 3 cut(s) 403, 454, 529
BstMWI GCNNNNNNNGC 4 cut(s) 92, 318, 591, 600
BstSFI CTRYAG 2 cut(s) 39, 525
BstV2I GAAGAC 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 2 cut(s) 232, 240
Cac8I GCNNGC 3 cut(s) 64, 592, 605
Csp6I GTAC 1 cut(s) 464
CviAII CATG 3 cut(s) 140, 335, 566
CviJI RGCY 9 cut(s) 11, 44, 62, 113, 261, 329, 413, 491, 594
CviKI_1 RGCY 9 cut(s) 11, 44, 62, 113, 261, 329, 413, 491, 594
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 3 cut(s) 45, 324, 552
DpnI GATC 3 cut(s) 405, 456, 531
DpnII GATC 3 cut(s) 403, 454, 529
Eco130I CCWWGG 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 3 cut(s) 143, 338, 569
FaiI YATR 8 cut(s) 41, 54, 71, 141, 207, 336, 344, 567
FatI CATG 3 cut(s) 139, 334, 565
FokI GGATG 2 cut(s) 239, 247
FspBI CTAG 2 cut(s) 369, 447
GsuI CTGGAG 1 cut(s) 120
Hin1II CATG 3 cut(s) 143, 338, 569
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 4 cut(s) 392, 481, 548, 610
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 9 cut(s) 90, 99, 242, 389, 407, 423, 485, 501, 545
HpyAV CCTTC 2 cut(s) 265, 507
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 3 cut(s) 86, 205, 217
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 318, 591, 600
HpyF3I CTNAG 3 cut(s) 45, 324, 552
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 3 cut(s) 143, 338, 569
Kzo9I GATC 3 cut(s) 403, 454, 529
LpnPI CCDG 5 cut(s) 84, 140, 491, 539, 576
LweI GCATC 2 cut(s) 95, 104
MaeI CTAG 2 cut(s) 369, 447
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 405, 456, 531
MboI GATC 3 cut(s) 403, 454, 529
MboII GAAGA 6 cut(s) 35, 160, 173, 298, 301, 357
MluCI AATT 7 cut(s) 32, 119, 208, 252, 379, 384, 440
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 4 cut(s) 225, 423, 477, 532
MseI TTAA 1 cut(s) 146
MwoI GCNNNNNNNGC 4 cut(s) 92, 318, 591, 600
NcoI CCATGG 1 cut(s) 565
NdeII GATC 3 cut(s) 403, 454, 529
NlaIII CATG 3 cut(s) 143, 338, 569
NmuCI GTSAC 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 90
PfeI GAWTC 2 cut(s) 392, 481
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 146
Sau3AI GATC 3 cut(s) 403, 454, 529
SchI GAGTC 1 cut(s) 542
SfaNI GCATC 2 cut(s) 95, 104
SfcI CTRYAG 2 cut(s) 39, 525
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 7 cut(s) 32, 119, 208, 252, 379, 384, 440
SspMI CTAG 2 cut(s) 369, 447
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 544
TaqI TCGA 1 cut(s) 91
TasI AATT 7 cut(s) 32, 119, 208, 252, 379, 384, 440
TfiI GAWTC 2 cut(s) 392, 481
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 5 cut(s) 17, 21, 120, 143, 213
XhoI CTCGAG 1 cut(s) 90
XspI CTAG 2 cut(s) 369, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.