Rorug07G0209800

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000414
Physical Location & Seq
Forward (+)
18485889 .. 18486341
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0209800.1

Sequence Viewer

Length: 453 bp
ATGGCTTGTTTGGGCGTTTGTTCGGGTGCCTCTTCATCGGAGGCTGTTCACAGTGGAGTTGTTTACAAAGTCGGTGACTCAATTGGGTGGAGCATTTTTGGTGATTACAAGAAGTGGACTTCCACAAAAGAGTTTCACGTCGGAGATACTCTACTTTTCGCTTATGATAAGGAATTTCATAACTTGATGGAAGTGAATGGAGAAGACTACCAATCTTGCAACACAGAGTCTCCTCTAGCACTCTATGCTGCCGGACTTGATTCTATCCCTCTTGACAAACCGGGTGACTATTACTTCATCTGCGGTAGAAATTTCGAACCAGACTGGTATGCCATGACTCTCAAGGAACCAGGTCACTGCCAAGCAGGACAAAAACTTCACGTCAAGGTCACTCTACCAATATCAGATCACCATTTCGTTGCAAGTCCAACCCCAGCACCAGCGCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

5.36

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 30 - 103 3.8e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 173, 310
AjiI CACGTC 2 cut(s) 139, 382
AjnI CCWGG 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 173, 310
AspLEI GCGC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 4 cut(s) 86, 113, 296, 401
AsuII TTCGAA 1 cut(s) 315
BanI GGYRCC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 351
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 446
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 282, 351
BmgBI CACGTC 2 cut(s) 139, 382
BmiI GGNNCC 2 cut(s) 28, 348
BmrFI CCNGG 2 cut(s) 282, 351
BpiI GAAGAC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 252, 281
BsmAI GTCTC 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 315
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 28, 348
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 329
BssMI GATC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 280, 349
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 210
BtrI CACGTC 2 cut(s) 139, 382
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 58, 355
CfoI GCGC 1 cut(s) 445
CsiI ACCWGGT 1 cut(s) 349
CviAII CATG 1 cut(s) 334
CviJI RGCY 2 cut(s) 5, 44
CviKI_1 RGCY 2 cut(s) 5, 44
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 1 cut(s) 337
FaiI YATR 5 cut(s) 165, 180, 246, 330, 335
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 249
GsaI CCCAGC 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 446
HapII CCGG 2 cut(s) 252, 281
HhaI GCGC 1 cut(s) 445
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HinfI GANTC 4 cut(s) 77, 227, 260, 337
HpaII CCGG 2 cut(s) 252, 281
HphI GGTGA 4 cut(s) 86, 113, 296, 401
Hpy166II GTNNAC 3 cut(s) 49, 64, 117
Hpy188I TCNGA 3 cut(s) 40, 143, 406
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 3 cut(s) 49, 64, 117
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 138, 381
HpyCH4V TGCA 2 cut(s) 219, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 138, 381
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 265, 294, 310, 333, 336, 351, 363, 447
Lsp1109I GCAGC 1 cut(s) 235
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 236
MaeII ACGT 2 cut(s) 138, 381
MaeIII GTNAC 4 cut(s) 74, 284, 353, 388
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 24, 215
MfeI CAATTG 1 cut(s) 81
MluCI AATT 3 cut(s) 81, 173, 310
MlyI GAGTC 3 cut(s) 71, 236, 331
MmeI TCCRAC 2 cut(s) 121, 452
MnlI CCTC 4 cut(s) 34, 40, 243, 279
MspI CCGG 2 cut(s) 252, 281
MspR9I CCNGG 2 cut(s) 282, 351
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 282
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 28, 348
NmuCI GTSAC 4 cut(s) 74, 284, 353, 388
NspV TTCGAA 1 cut(s) 315
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 3 cut(s) 71, 235, 331
PpsI GAGTC 3 cut(s) 71, 235, 331
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 433
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 28, 348
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 3 cut(s) 71, 236, 331
ScrFI CCNGG 2 cut(s) 282, 351
SetI ASST 4 cut(s) 141, 355, 384, 390
SexAI ACCWGGT 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 81, 173, 310
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 280, 349
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 2 cut(s) 141, 384
TaqI TCGA 1 cut(s) 315
TasI AATT 3 cut(s) 81, 173, 310
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 58, 362
TseFI GTSAC 4 cut(s) 74, 284, 353, 388
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 4 cut(s) 74, 284, 353, 388
TspDTI ATGAA 3 cut(s) 24, 167, 286
TspRI CASTG 2 cut(s) 58, 362
XapI RAATTY 2 cut(s) 173, 310
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.