Rmu_sc0002206.1_g000012

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002206.1
OG0000414
Physical Location & Seq
Forward (+)
47377 .. 48792
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002206.1_g000012.1.cds

Sequence Viewer

Length: 1182 bp
atggatgacagtacaacaagtaatttggatgagggcatcaataagtctcttgattggattcctcgaataggtatgcaatttgatacagtagatgctgcatttcagttttggcgtacctatggaggccgacctggttttggggttcgaaaactgtatgcaaataagagtcggatagatggacaaactactacagttagatttgtgtgctcaaaagagggtcatcgagtaccagataaacgagatcatctaacaaagaaccctagagcagaaacaagaacaaactgtcttgtacgattgggactgcaattcaatagagaaagtagcaagtttgaggttcatgattttgtacatgagcataatcatcttctgcatactccagaaacgtgtcacatgattccatctcaacggaatctaacagatagtcaagctattcatattgattttgccgatgactctggacttaaaccaaaggctgcacaccaatttttcagtcaacaagttggtgggaaggaaaatcttggatacactgaaagagatcaaaaaaattacttaagaagtaagcgccaaaaggatatggcctatggagaagcaggcagcctcttgaggtatttacacaatcaatcttctgaatcttttaagtggttgttccagacattcttagaagcacataagcaaaaaaagccaaagactatatttacagaccaagatcctgcaatggcaaaggcattggccgaggtgcttccagatacgtttcatggattatgtagttggcatacaatgcaaaatggaatcaagcatttgggatacctgatgaaggatggctcattttttcttacagattttgcagcatgcatgtatgagcacgaggaagagaaagaatttgaagatgcttggaatgatatgctatgcaaatataatgtctgcagcaatccatggttggaaaagatatatgaaattaaggagaaatgggctaaatgttatatgaaaaaggtatttacaattggtatgcgaagtacacagcttattgaaagcctgaacagtgatttaaaagcttacttaaagtcagacatggatatcatgcgttttttgaaacagtttgaaagggttgctaatgaaaagcactataaggacttagaagctgagtataattctagacaaaagccaccaagagtgcatgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

393

Amino Acids

45.97

Weight (kDa)

8.27

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 701
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 1 cut(s) 878
AfaI GTAC 6 cut(s) 13, 115, 228, 291, 348, 1015
AfiI CCNNNNNNNGG 3 cut(s) 68, 137, 814
AflII CTTAAG 1 cut(s) 550
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 5 cut(s) 310, 884, 1028, 1090, 1100
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 4 cut(s) 428, 1021, 1052, 1139
AluI AGCT 4 cut(s) 428, 1021, 1052, 1139
Alw21I GWGCWC 2 cut(s) 209, 864
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 701
AoxI GGCC 3 cut(s) 124, 576, 729
ApeKI GCWGC 5 cut(s) 95, 473, 594, 845, 924
ApoI RAATTY 1 cut(s) 878
ArsI GACNNNNNNTTYG 2 cut(s) 903, 935
AspLEI GCGC 1 cut(s) 564
AsuII TTCGAA 1 cut(s) 145
BauI CACGAG 1 cut(s) 863
Bbv12I GWGCWC 2 cut(s) 209, 864
BbvI GCAGC 5 cut(s) 82, 460, 606, 857, 936
BccI CCATC 3 cut(s) 170, 406, 812
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 2 cut(s) 515, 797
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 2 cut(s) 261, 1152
BfmI CTRYAG 2 cut(s) 189, 922
BfoI RGCGCY 1 cut(s) 565
BfrI CTTAAG 1 cut(s) 550
BfuI GTATCC 2 cut(s) 515, 797
BisI GCNGC 5 cut(s) 96, 474, 595, 846, 925
BlsI GCNGC 5 cut(s) 97, 475, 596, 847, 926
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 45, 82, 877
BpmI CTGGAG 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 732, 932
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 137, 814
Bse3DI GCAATG 1 cut(s) 720
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 732, 932
BseGI GGATG 3 cut(s) 10, 34, 823
BseLI CCNNNNNNNGG 3 cut(s) 68, 137, 814
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 1 cut(s) 1131
BseXI GCAGC 5 cut(s) 82, 460, 606, 857, 936
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 3 cut(s) 126, 578, 731
BsiHKAI GWGCWC 2 cut(s) 209, 864
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 68, 137, 814
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 3 cut(s) 126, 578, 731
Bsp119I TTCGAA 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 209, 864
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 241, 535, 706
Bsp19I CCATGG 1 cut(s) 932
BspANI GGCC 3 cut(s) 126, 578, 731
BspCNI CTCAG 1 cut(s) 1132
BspHI TCATGA 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 926
BspPI GGATC 1 cut(s) 701
BspT104I TTCGAA 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 720
BsrGI TGTACA 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 732, 932
BssMI GATC 3 cut(s) 241, 535, 706
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 863
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 7 cut(s) 11, 88, 153, 193, 284, 1040, 1095
Bst6I CTCTTC 1 cut(s) 864
BstAFI CTTAAG 1 cut(s) 550
BstAPI GCANNNNNTGC 1 cut(s) 778
BstAUI TGTACA 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 592, 850
BstDEI CTNAG 3 cut(s) 658, 1132, 1140
BstDSI CCRYGG 1 cut(s) 932
BstENI CCTNNNNNAGG 2 cut(s) 66, 812
BstF5I GGATG 3 cut(s) 10, 34, 823
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 3 cut(s) 244, 538, 709
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 3 cut(s) 241, 535, 706
BstMWI GCNNNNNNNGC 2 cut(s) 679, 778
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 3 cut(s) 852, 856, 1178
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 189, 922
BstV1I GCAGC 5 cut(s) 82, 460, 606, 857, 936
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
BsuI GTATCC 2 cut(s) 515, 797
BsuRI GGCC 3 cut(s) 126, 578, 731
BtgI CCRYGG 1 cut(s) 932
BtsCI GGATG 3 cut(s) 10, 34, 823
BtsIMutI CAGTG 2 cut(s) 525, 1045
Cac8I GCNNGC 2 cut(s) 592, 850
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 564
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 6 cut(s) 12, 114, 227, 290, 347, 1014
CviQI GTAC 6 cut(s) 12, 114, 227, 290, 347, 1014
DdeI CTNAG 3 cut(s) 658, 1132, 1140
DpnI GATC 3 cut(s) 243, 537, 708
DpnII GATC 3 cut(s) 241, 535, 706
DraI TTTAAA 1 cut(s) 1047
EaeI YGGCCR 1 cut(s) 729
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 932
Eco32I GATATC 1 cut(s) 1075
EcoNI CCTNNNNNAGG 2 cut(s) 66, 812
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 1075
EcoT14I CCWWGG 1 cut(s) 932
EcoT22I ATGCAT 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 932
FaqI GGGAC 1 cut(s) 312
Fnu4HI GCNGC 5 cut(s) 96, 474, 595, 846, 925
FokI GGATG 3 cut(s) 17, 41, 830
Fsp4HI GCNGC 5 cut(s) 96, 474, 595, 846, 925
FspBI CTAG 2 cut(s) 261, 1152
GlaI GCGC 1 cut(s) 563
GluI GCNGC 5 cut(s) 96, 474, 595, 846, 925
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 3 cut(s) 126, 578, 731
HhaI GCGC 1 cut(s) 564
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 1050
HinfI GANTC 7 cut(s) 58, 166, 394, 409, 452, 629, 789
Hpy166II GTNNAC 2 cut(s) 494, 1016
Hpy188I TCNGA 3 cut(s) 171, 628, 1066
Hpy188III TCNNGA 8 cut(s) 50, 338, 377, 456, 601, 649, 743, 1152
Hpy8I GTNNAC 2 cut(s) 494, 1016
HpyAV CCTTC 2 cut(s) 502, 808
HpyCH4III ACNGT 7 cut(s) 11, 88, 153, 193, 284, 1040, 1095
HpyCH4IV ACGT 2 cut(s) 383, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 679, 778
HpyF3I CTNAG 3 cut(s) 658, 1132, 1140
HpySE526I ACGT 2 cut(s) 383, 749
HspAI GCGC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 241, 535, 706
Lsp1109I GCAGC 5 cut(s) 82, 460, 606, 857, 936
LweI GCATC 3 cut(s) 45, 82, 877
MabI ACCWGGT 1 cut(s) 130
MaeI CTAG 2 cut(s) 261, 1152
MaeII ACGT 2 cut(s) 383, 749
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 243, 537, 708
MboI GATC 3 cut(s) 241, 535, 706
MboII GAAGA 4 cut(s) 356, 615, 881, 896
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 2 cut(s) 209, 864
MluCI AATT 9 cut(s) 22, 77, 305, 482, 544, 878, 954, 999, 1147
MlyI GAGTC 2 cut(s) 175, 446
MmeI TCCRAC 2 cut(s) 149, 918
MnlI CCTC 9 cut(s) 25, 72, 116, 208, 325, 597, 608, 727, 859
Mph1103I ATGCAT 1 cut(s) 854
MseI TTAA 6 cut(s) 462, 551, 636, 957, 1046, 1058
MspCI CTTAAG 1 cut(s) 550
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 999
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 679, 778
NcoI CCATGG 1 cut(s) 932
NdeII GATC 3 cut(s) 241, 535, 706
NmeAIII GCCGAG 1 cut(s) 757
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 854
NspI RCATGY 3 cut(s) 852, 856, 1178
NspV TTCGAA 1 cut(s) 145
PaeI GCATGC 1 cut(s) 852
PagI TCATGA 1 cut(s) 337
PfeI GAWTC 5 cut(s) 58, 394, 409, 629, 789
PkrI GCNGC 5 cut(s) 97, 475, 596, 847, 926
PleI GAGTC 2 cut(s) 174, 446
PpsI GAGTC 2 cut(s) 174, 446
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PstI CTGCAG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 6 cut(s) 13, 115, 228, 291, 348, 1015
RsaNI GTAC 6 cut(s) 12, 114, 227, 290, 347, 1014
SaqAI TTAA 6 cut(s) 462, 551, 636, 957, 1046, 1058
SatI GCNGC 5 cut(s) 96, 474, 595, 846, 925
Sau3AI GATC 3 cut(s) 241, 535, 706
SchI GAGTC 2 cut(s) 175, 446
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 209, 864
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 3 cut(s) 45, 82, 877
SfcI CTRYAG 2 cut(s) 189, 922
SfuI TTCGAA 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 550, 601
SmoI CTYRAG 2 cut(s) 550, 601
SphI GCATGC 1 cut(s) 852
Sse9I AATT 9 cut(s) 22, 77, 305, 482, 544, 878, 954, 999, 1147
SspMI CTAG 2 cut(s) 261, 1152
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 7 cut(s) 11, 88, 153, 193, 284, 1040, 1095
TaiI ACGT 2 cut(s) 386, 752
TaqI TCGA 3 cut(s) 64, 145, 223
TasI AATT 9 cut(s) 22, 77, 305, 482, 544, 878, 954, 999, 1147
TatI WGTACW 3 cut(s) 11, 346, 1013
TfiI GAWTC 5 cut(s) 58, 394, 409, 629, 789
Tru1I TTAA 6 cut(s) 462, 551, 636, 957, 1046, 1058
Tru9I TTAA 6 cut(s) 462, 551, 636, 957, 1046, 1058
TscAI CASTG 2 cut(s) 532, 1045
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 5 cut(s) 95, 473, 594, 845, 924
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 7 cut(s) 326, 422, 743, 827, 966, 998, 1128
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 2 cut(s) 532, 1045
Vha464I CTTAAG 1 cut(s) 550
XagI CCTNNNNNAGG 2 cut(s) 66, 812
XapI RAATTY 1 cut(s) 878
XbaI TCTAGA 1 cut(s) 1151
XceI RCATGY 3 cut(s) 852, 856, 1178
XspI CTAG 2 cut(s) 261, 1152
Zsp2I ATGCAT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.