Rmu_sc0002985.1_g000009

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002985.1
Physical Location & Seq
Reverse (-)
30497 .. 31090
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002985.1_g000009.1.cds

Sequence Viewer

Length: 594 bp
atggttgcagataaaaggtacaaggagttacaagcagaatatgatatgtgcttcaggttgcctattctgaaaatgcatgtcaaaatgctatatgaagcaagaaaagtttacactaaactaatatttgaagagtttcaagatcaatttgaatcgtctcttgaagcttctataacagattgtgttgatgttgatggtggaaagatatatactgtgattagagatggttactctagagaacggcaagtgaagagagatagtgatgatatactctcttatagttgcagattatttgagatgaaagggtttgtatgtaggcacattatcaaggtccttagagaagtgatgcaaatcaaagaaattcctgagcattatatcttaaaaagatggaccaaaaaagctcgagctgaaagtgttcaagacatggatgggcgtgaaattcaaccagaccctaagttgcaacaagcctcttggtacagatctttatgttccacctacattagaatatcaagcagggcttctgaaaatgaaaaagcatacaaattagtcatgacaaatgcagagaagttagcaaaagaagttgaagaattgctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

23.4

Weight (kDa)

8.17

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 357, 435
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 2 cut(s) 20, 473
AgsI TTSAA 7 cut(s) 128, 137, 149, 161, 416, 440, 581
AluBI AGCT 3 cut(s) 164, 398, 404
AluI AGCT 3 cut(s) 164, 398, 404
Alw26I GTCTC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 399
ApoI RAATTY 2 cut(s) 357, 435
Asp700I GAANNNNTTC 2 cut(s) 132, 411
AspS9I GGNCC 2 cut(s) 328, 387
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 328, 387
BccI CCATC 4 cut(s) 185, 215, 378, 419
BceAI ACGGC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 476
Bme18I GGWCC 2 cut(s) 328, 387
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 328, 387
BmsI GCATC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 347
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 347
BseMII CTCAG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 399
Bsp143I GATC 2 cut(s) 139, 476
BspCNI CTCAG 1 cut(s) 355
BspHI TCATGA 1 cut(s) 546
BssMI GATC 2 cut(s) 139, 476
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 123, 242
BstDEI CTNAG 3 cut(s) 332, 363, 450
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 2 cut(s) 142, 479
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 139, 476
BstNSI RCATGY 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 1 cut(s) 430
CciI TCATGA 1 cut(s) 546
Cfr13I GGNCC 2 cut(s) 328, 387
Csp6I GTAC 2 cut(s) 19, 472
CviAII CATG 3 cut(s) 77, 421, 547
CviJI RGCY 5 cut(s) 164, 398, 404, 464, 515
CviKI_1 RGCY 5 cut(s) 164, 398, 404, 464, 515
CviQI GTAC 2 cut(s) 19, 472
DdeI CTNAG 3 cut(s) 332, 363, 450
DpnI GATC 2 cut(s) 141, 478
DpnII GATC 2 cut(s) 139, 476
Eam1104I CTCTTC 2 cut(s) 123, 242
EarI CTCTTC 2 cut(s) 123, 242
Eco47I GGWCC 2 cut(s) 328, 387
Eco57I CTGAAG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 3 cut(s) 80, 424, 550
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FatI CATG 3 cut(s) 76, 420, 546
FokI GGATG 1 cut(s) 437
FspBI CTAG 1 cut(s) 231
Hin1II CATG 3 cut(s) 80, 424, 550
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 69, 520
Hpy188III TCNNGA 6 cut(s) 137, 158, 231, 362, 416, 547
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 6 cut(s) 8, 76, 282, 346, 457, 557
HpyF3I CTNAG 3 cut(s) 332, 363, 450
Hsp92II CATG 3 cut(s) 80, 424, 550
Kzo9I GATC 2 cut(s) 139, 476
LpnPI CCDG 4 cut(s) 40, 375, 456, 496
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 27, 224
MalI GATC 2 cut(s) 141, 478
MboI GATC 2 cut(s) 139, 476
MboII GAAGA 3 cut(s) 140, 259, 593
MflI RGATCY 1 cut(s) 476
MluCI AATT 5 cut(s) 143, 357, 435, 539, 584
MnlI CCTC 1 cut(s) 475
Mph1103I ATGCAT 1 cut(s) 78
MroXI GAANNNNTTC 2 cut(s) 132, 411
MseI TTAA 1 cut(s) 377
NdeII GATC 2 cut(s) 139, 476
NlaIII CATG 3 cut(s) 80, 424, 550
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 399
PagI TCATGA 1 cut(s) 546
PdmI GAANNNNTTC 2 cut(s) 132, 411
PfeI GAWTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspPI GGNCC 2 cut(s) 328, 387
PspPPI RGGWCCY 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 399
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 20, 473
RsaNI GTAC 2 cut(s) 19, 472
SaqAI TTAA 1 cut(s) 377
Sau3AI GATC 2 cut(s) 139, 476
Sau96I GGNCC 2 cut(s) 328, 387
SetI ASST 7 cut(s) 20, 59, 166, 330, 400, 406, 494
SfaNI GCATC 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 328, 387
SlaI CTCGAG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 5 cut(s) 143, 357, 435, 539, 584
SspI AATATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 400
TasI AATT 5 cut(s) 143, 357, 435, 539, 584
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 108, 311, 540
VpaK11BI GGWCC 2 cut(s) 328, 387
XapI RAATTY 2 cut(s) 357, 435
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 399
XmnI GAANNNNTTC 2 cut(s) 132, 411
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.