Rmu_sc0001436.1_g000002

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001436.1
OG0000414
Physical Location & Seq
Forward (+)
7935 .. 8696
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001436.1_g000002.1.cds

Sequence Viewer

Length: 762 bp
atgtatgggcgaagagttgagtttagtattagaagacatacacattacaagaacaagcattctggtaagctcatcttaagaatatttgtttgttctaaagaaggtttacgtacaatagataagcgagaccatttgactaagaatcctcgagcggagacacgaacaagttgtgatgctgaaatgatcattaagttggataaatcaagtggtaggtacagagttgttcaatttgaagaaactcacagccatgatcttgtaatacaagagtgtgctcacatgctaccatctcaacgaaatgttacttcttcacaaggagctgagatggaattggtacaagattctagaatcccactgaagctttcattcgagttaatgggcagagaagttggtggaagagaggctcttggattcactaaacaatatcaaaaaaattatcttcaatctcagaggcaaaagaaattggcatatggagaagtaggatgcttattaaaatacttccaaaatcaagcattagaaaatccctcatttttctatgctgtgcaattggatagtgatgagcaaataacaaatattctttgggctgatgttaggatgatacttgattatggtttatttggtgatgttgtgagttttgacactacatacagaactaatgaagccaatcgtccatttggagtatttgtgggatttaatcatcatcgtgagactgtaatctttggggcagcattgatgtatgatgaaacttctgattcgtttacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

253

Amino Acids

29.33

Weight (kDa)

8.27

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 152
AciI CCGC 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 3 cut(s) 112, 215, 333
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 3 cut(s) 227, 233, 440
AluBI AGCT 3 cut(s) 70, 317, 358
AluI AGCT 3 cut(s) 70, 317, 358
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 3 cut(s) 120, 149, 698
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 722
AsuHPI GGTGA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 734
BccI CCATC 2 cut(s) 292, 316
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 120, 149, 698
BfaI CTAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 723
BlsI GCNGC 1 cut(s) 724
BmeT110I CYCGRG 1 cut(s) 147
BmsI GCATC 2 cut(s) 163, 470
BpiI GAAGAC 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
BseGI GGATG 2 cut(s) 485, 597
BseMII CTCAG 2 cut(s) 309, 458
BseXI GCAGC 1 cut(s) 734
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 147
BsmAI GTCTC 3 cut(s) 120, 149, 698
BsmI GAATGC 1 cut(s) 58
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 183, 250
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 310, 457
BspTI CTTAAG 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 152
BssMI GATC 2 cut(s) 183, 250
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 2 cut(s) 7, 388
BstAFI CTTAAG 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 110
BstDEI CTNAG 3 cut(s) 138, 318, 444
BstF5I GGATG 2 cut(s) 485, 597
BstKTI GATC 2 cut(s) 186, 253
BstMAI GTCTC 3 cut(s) 120, 149, 698
BstMBI GATC 2 cut(s) 183, 250
BstNSI RCATGY 1 cut(s) 280
BstSNI TACGTA 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 485, 597
BtsIMutI CAGTG 1 cut(s) 350
Csp6I GTAC 3 cut(s) 111, 214, 332
CviAII CATG 3 cut(s) 248, 277, 759
CviJI RGCY 7 cut(s) 70, 246, 317, 358, 401, 581, 659
CviKI_1 RGCY 7 cut(s) 70, 246, 317, 358, 401, 581, 659
CviQI GTAC 3 cut(s) 111, 214, 332
DdeI CTNAG 3 cut(s) 138, 318, 444
DpnI GATC 2 cut(s) 185, 252
DpnII GATC 2 cut(s) 183, 250
Eam1104I CTCTTC 2 cut(s) 7, 388
EarI CTCTTC 2 cut(s) 7, 388
Eco105I TACGTA 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 147
FaeI CATG 3 cut(s) 251, 280, 762
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 3 cut(s) 247, 276, 758
FauNDI CATATG 1 cut(s) 466
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 723
FokI GGATG 2 cut(s) 492, 604
Fsp4HI GCNGC 1 cut(s) 723
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 723
Hin1II CATG 3 cut(s) 251, 280, 762
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 5 cut(s) 142, 338, 345, 408, 749
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 2 cut(s) 107, 756
Hpy188I TCNGA 2 cut(s) 447, 748
Hpy188III TCNNGA 2 cut(s) 342, 701
Hpy8I GTNNAC 2 cut(s) 107, 756
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 541
HpyF3I CTNAG 3 cut(s) 138, 318, 444
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 3 cut(s) 251, 280, 762
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 183, 250
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 734
LweI GCATC 2 cut(s) 163, 470
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 185, 252
MbiI CCGCTC 1 cut(s) 152
MboI GATC 2 cut(s) 183, 250
MboII GAAGA 6 cut(s) 24, 45, 245, 297, 405, 428
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 5 cut(s) 227, 326, 430, 458, 542
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 156, 391, 441, 532
MseI TTAA 5 cut(s) 77, 189, 371, 488, 690
MslI CAYNNNNRTG 2 cut(s) 246, 699
MspCI CTTAAG 1 cut(s) 76
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 58
NdeI CATATG 1 cut(s) 466
NdeII GATC 2 cut(s) 183, 250
NlaIII CATG 3 cut(s) 251, 280, 762
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 147
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 5 cut(s) 142, 338, 345, 408, 749
PkrI GCNGC 1 cut(s) 724
Ppu21I YACGTR 1 cut(s) 110
PspXI VCTCGAGB 1 cut(s) 147
RsaI GTAC 3 cut(s) 112, 215, 333
RsaNI GTAC 3 cut(s) 111, 214, 332
RseI CAYNNNNRTG 2 cut(s) 246, 699
SaqAI TTAA 5 cut(s) 77, 189, 371, 488, 690
SatI GCNGC 1 cut(s) 723
Sau3AI GATC 2 cut(s) 183, 250
SduI GDGCHC 1 cut(s) 274
SetI ASST 6 cut(s) 72, 106, 112, 215, 319, 360
SfaNI GCATC 2 cut(s) 163, 470
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 246, 699
SmlI CTYRAG 2 cut(s) 76, 147
SmoI CTYRAG 2 cut(s) 76, 147
SnaBI TACGTA 1 cut(s) 110
Sse9I AATT 5 cut(s) 227, 326, 430, 458, 542
SsiI CCGC 1 cut(s) 152
SspI AATATT 2 cut(s) 84, 571
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 148, 366
TasI AATT 5 cut(s) 227, 326, 430, 458, 542
TfiI GAWTC 5 cut(s) 142, 338, 345, 408, 749
Tru1I TTAA 5 cut(s) 77, 189, 371, 488, 690
Tru9I TTAA 5 cut(s) 77, 189, 371, 488, 690
TscAI CASTG 1 cut(s) 357
TseI GCWGC 1 cut(s) 722
TspDTI ATGAA 3 cut(s) 351, 669, 753
TspRI CASTG 1 cut(s) 357
Vha464I CTTAAG 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.