Rh1AG084000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000414
Physical Location & Seq
Reverse (-)
14385458 .. 14385880
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG084000.1

Sequence Viewer

Length: 423 bp
ATGAAGAAACACAGTTTCATGGAGGGACTTCGAGACTCGATTCGACGCGAGTTACGCTCTGACACTACCGTGAGCTGCAGTGAGTCCGTAGCAGCCGCCTACGCCATCGAGGCTGGTGAAGTTACACACCCAAGATGTGGGGATGGTCAGGGAAGCTCTCACCCACGGAGGAATCGCTGGGTGCACCGGAGGAAGCTCCGAGGAGGGAACTCCCAAGGATATACTAGTCCCTGCAATAGCAGTGGTTCTTTAGGAAGACCGGGCGCTGCACCCTACACTTGTTTTGCTTGTGGCCAACCTAGACACACCAAGGTTCGCTGCCCGTTTGTTAACAACTCACAAGGAGCATCTTCTGGCTTGGGATTCCAGAATCTGAGGCCAGCTCAGTCGCTGTCAACTCAGATATCGCCAGCACTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.15

Weight (kDa)

10.07

Isoelectric Point (pI)

67.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 137
AhlI ACTAGT 1 cut(s) 224
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 4 cut(s) 75, 156, 196, 383
AluI AGCT 4 cut(s) 75, 156, 196, 383
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 182
AlwNI CAGNNNCTG 2 cut(s) 373, 391
AoxI GGCC 2 cut(s) 292, 377
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 4 cut(s) 75, 92, 266, 318
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 128, 152
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 62, 104, 253, 305
BccI CCATC 2 cut(s) 113, 137
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 225, 300
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 267
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 5 cut(s) 76, 93, 96, 267, 319
BlsI GCNGC 5 cut(s) 77, 94, 97, 268, 320
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 367, 399
BpuMI CCSGG 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 164, 199, 214, 309
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseDI CCNNGG 4 cut(s) 164, 199, 214, 309
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 3 cut(s) 365, 398, 413
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 4 cut(s) 62, 104, 253, 305
BseYI CCCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 294, 379
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 187, 260
BslFI GGGAC 2 cut(s) 39, 213
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 39, 213
BsnI GGCC 2 cut(s) 294, 379
Bsp1286I GDGCHC 1 cut(s) 186
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 294, 379
BspCNI CTCAG 3 cut(s) 366, 397, 412
BspFNI CGCG 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 80
BssECI CCNNGG 4 cut(s) 164, 199, 214, 309
BssT1I CCWWGG 2 cut(s) 214, 309
Bst4CI ACNGT 2 cut(s) 14, 70
BstC8I GCNNGC 2 cut(s) 381, 411
BstDEI CTNAG 3 cut(s) 374, 384, 399
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 54, 101, 110
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 62, 104, 253, 305
BstV2I GAAGAC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 294, 379
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 2 cut(s) 85, 247
BtsIMutI CAGTG 2 cut(s) 85, 247
Cac8I GCNNGC 2 cut(s) 381, 411
CaiI CAGNNNCTG 2 cut(s) 373, 391
CfoI GCGC 1 cut(s) 266
CseI GACGC 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 19
CviJI RGCY 9 cut(s) 75, 95, 113, 156, 196, 294, 357, 379, 383
CviKI_1 RGCY 9 cut(s) 75, 95, 113, 156, 196, 294, 357, 379, 383
DdeI CTNAG 3 cut(s) 374, 384, 399
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 214, 309
Eco32I GATATC 1 cut(s) 405
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 214, 309
ErhI CCWWGG 2 cut(s) 214, 309
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 222
FaqI GGGAC 2 cut(s) 39, 213
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 5 cut(s) 76, 93, 96, 267, 319
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 76, 93, 96, 267, 319
FspBI CTAG 2 cut(s) 225, 300
GlaI GCGC 1 cut(s) 265
GluI GCNGC 5 cut(s) 76, 93, 96, 267, 319
GsaI CCCAGC 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 2 cut(s) 294, 379
HapII CCGG 2 cut(s) 187, 260
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 2 cut(s) 331, 396
HindII GTYRAC 2 cut(s) 331, 396
HinfI GANTC 6 cut(s) 35, 40, 83, 172, 363, 370
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 2 cut(s) 187, 260
HphI GGTGA 2 cut(s) 128, 152
Hpy166II GTNNAC 3 cut(s) 184, 331, 396
Hpy188I TCNGA 4 cut(s) 61, 200, 375, 402
Hpy188III TCNNGA 2 cut(s) 32, 367
Hpy8I GTNNAC 3 cut(s) 184, 331, 396
Hpy99I CGWCG 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 14, 70
HpyCH4V TGCA 4 cut(s) 78, 184, 234, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 101, 110
HpyF3I CTNAG 3 cut(s) 374, 384, 399
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 264
KspAI GTTAAC 1 cut(s) 331
LmnI GCTCC 2 cut(s) 201, 344
LpnPI CCDG 9 cut(s) 99, 134, 163, 200, 244, 273, 339, 380, 393
Lsp1109I GCAGC 4 cut(s) 62, 104, 253, 305
LweI GCATC 1 cut(s) 356
MaeI CTAG 2 cut(s) 225, 300
MaeIII GTNAC 2 cut(s) 51, 121
MboII GAAGA 3 cut(s) 16, 267, 342
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 2 cut(s) 29, 92
MnlI CCTC 7 cut(s) 16, 103, 162, 183, 194, 197, 369
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 2 cut(s) 187, 260
MspR9I CCNGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 54, 101, 110
NciI CCSGG 1 cut(s) 261
NlaIII CATG 1 cut(s) 22
OliI CACNNNNGTG 1 cut(s) 68
PfeI GAWTC 4 cut(s) 40, 172, 363, 370
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 5 cut(s) 77, 94, 97, 268, 320
PleI GAGTC 2 cut(s) 29, 91
PpsI GAGTC 2 cut(s) 29, 91
PspFI CCCAGC 1 cut(s) 177
PstI CTGCAG 1 cut(s) 80
PstNI CAGNNNCTG 2 cut(s) 373, 391
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 5 cut(s) 76, 93, 96, 267, 319
SchI GAGTC 2 cut(s) 29, 92
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 186
SetI ASST 6 cut(s) 77, 158, 198, 301, 315, 385
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 68
SpeI ACTAGT 1 cut(s) 224
SsiI CCGC 1 cut(s) 96
SspMI CTAG 2 cut(s) 225, 300
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 214, 309
TaaI ACNGT 2 cut(s) 14, 70
TaqI TCGA 4 cut(s) 31, 38, 43, 108
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 4 cut(s) 40, 172, 363, 370
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 85, 247
TseI GCWGC 4 cut(s) 75, 92, 266, 318
TspDTI ATGAA 2 cut(s) 7, 17
TspGWI ACGGA 2 cut(s) 76, 181
TspRI CASTG 2 cut(s) 85, 247
Van91I CCANNNNNTGG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 182
XspI CTAG 2 cut(s) 225, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.