Rroxscaffold_4G00283230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000414
Physical Location & Seq
Forward (+)
5203484 .. 5207955
4472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283230.1

Sequence Viewer

Length: 246 bp
ATGGAGGTTACTCCTGATCAAATGATTGATGTATACAAGGTGACTTTTGATCCAAGATGTAATGAAGAGAATGCTACTCTTGATCTAACAAACAATGCAGAGAATGATGCTTCTGTTATAACAAGTAATGCAGATCAATTTCTGGAACAAGACTTTTGTGCATCTTCACTTAGTCAGAATGGAAGGCTTGAACACTTACCTGCAGCTTCAAGATGCAGATCCCCAAATTCGAGGAATGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

4.29

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 208
AccI GTMKAC 1 cut(s) 33
AclWI GGATC 2 cut(s) 44, 213
AcsI RAATTY 1 cut(s) 226
AgsI TTSAA 2 cut(s) 191, 210
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwI GGATC 2 cut(s) 44, 213
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 52
BbvI GCAGC 1 cut(s) 215
BclI TGATCA 1 cut(s) 16
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmsI GCATC 3 cut(s) 97, 170, 203
BsaBI GATNNNNATC 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 217
BseXI GCAGC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 76
Bsp143I GATC 5 cut(s) 16, 49, 82, 133, 218
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 2 cut(s) 44, 213
BssMI GATC 5 cut(s) 16, 49, 82, 133, 218
BssNAI GTATAC 1 cut(s) 34
Bst1107I GTATAC 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 170
BstKTI GATC 5 cut(s) 19, 52, 85, 136, 221
BstMBI GATC 5 cut(s) 16, 49, 82, 133, 218
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BstZ17I GTATAC 1 cut(s) 34
BveI ACCTGC 1 cut(s) 208
CviJI RGCY 2 cut(s) 187, 206
CviKI_1 RGCY 2 cut(s) 187, 206
DdeI CTNAG 1 cut(s) 170
DpnI GATC 5 cut(s) 18, 51, 84, 135, 220
DpnII GATC 5 cut(s) 16, 49, 82, 133, 218
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
FaiI YATR 2 cut(s) 34, 119
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 14, 80, 143, 210
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 98, 131, 161, 203, 216
HpyF3I CTNAG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 49, 82, 133, 218
LpnPI CCDG 3 cut(s) 27, 128, 213
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 3 cut(s) 97, 170, 203
MaeIII GTNAC 2 cut(s) 7, 40
MalI GATC 5 cut(s) 18, 51, 84, 135, 220
MboI GATC 5 cut(s) 16, 49, 82, 133, 218
MboII GAAGA 2 cut(s) 77, 156
MflI RGATCY 1 cut(s) 218
MluCI AATT 2 cut(s) 137, 226
MnlI CCTC 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 76
NdeII GATC 5 cut(s) 16, 49, 82, 133, 218
NmuCI GTSAC 1 cut(s) 40
PctI GAATGC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 205
PsiI TTATAA 1 cut(s) 119
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 218
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 5 cut(s) 16, 49, 82, 133, 218
SetI ASST 4 cut(s) 9, 42, 202, 208
SfaNI GCATC 3 cut(s) 97, 170, 203
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 137, 226
TaqI TCGA 1 cut(s) 230
TasI AATT 2 cut(s) 137, 226
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 78
XapI RAATTY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.