Rmu_sc0004092.1_g000039

PMR5 N terminal Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004092.1
OG0000414
Physical Location & Seq
Forward (+)
141497 .. 144615
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004092.1_g000039.1.cds

Sequence Viewer

Length: 660 bp
atgctggacaagcacctagagaagtcctccccatccacatccagagctttggccaatagtacagacaaagagaggctctctgtgccctccacttccaccagaaagtctcagctcgatcaccgtgccaccgccgctgccaccgcctcgctcgccaagaacaaatgctcctatggtgggtctcattttcgatggatttttgttttgaattgttggcttgggtttgtgaaatttggcttggtggttgtgggtagagtggatttggaggatttcagtgtaatggaggcaaatcagaccacaattgccgccccaataactccggtggcggtgccggtgccggtgccggccaatgagaccacgagctcacctccgaaatcgggttccagtgggaagaacgaccctaagagtgttgctgagaagggtgtgacatcgaattatacggatgtgttgaagaaacagagcaatgaaacaaaatccagtgtgtcggtgaaggaggggaaggatgatttgatcaagtctttgttgagttgtgatttgtttcacggggaatgggtcgaggatgattcataccctctttacgaacctgggtcttgtcctttgattgatgagcagttcaattgtattcgtaatggtagcccggaagaaggaagaagaaagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

219

Amino Acids

23.81

Weight (kDa)

7.62

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 325, 331, 337
AciI CCGC 5 cut(s) 129, 132, 141, 303, 323
AcoI YGGCCR 2 cut(s) 51, 342
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 3 cut(s) 174, 374, 641
AgsI TTSAA 3 cut(s) 205, 448, 613
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 47, 112, 360
AluI AGCT 3 cut(s) 47, 112, 360
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 3 cut(s) 111, 183, 344
AoxI GGCC 2 cut(s) 51, 342
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 3 cut(s) 110, 354, 496
BaeGI GKGCMC 1 cut(s) 87
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 3 cut(s) 325, 331, 337
BanII GRGCYC 1 cut(s) 362
BauI CACGAG 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 121
BccI CCATC 2 cut(s) 40, 183
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 582
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 3 cut(s) 111, 183, 344
BfaI CTAG 1 cut(s) 17
BisI GCNGC 3 cut(s) 132, 135, 303
BlsI GCNGC 3 cut(s) 133, 136, 304
Bme1390I CCNGG 2 cut(s) 582, 635
BmiI GGNNCC 4 cut(s) 327, 333, 339, 379
BmrFI CCNGG 2 cut(s) 582, 635
BplI GAGNNNNNCTC 6 cut(s) 11, 43, 62, 94, 349, 381
BpuMI CCSGG 1 cut(s) 635
BsaI GGTCTC 2 cut(s) 183, 344
BsaJI CCNNGG 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 374, 641
Bse118I RCCGGY 3 cut(s) 328, 334, 340
Bse1I ACTGG 2 cut(s) 381, 474
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 5 cut(s) 32, 38, 445, 505, 562
BseLI CCNNNNNNNGG 3 cut(s) 174, 374, 641
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 122, 402
BseNI ACTGG 2 cut(s) 381, 474
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 2 cut(s) 53, 344
BshNI GGYRCC 3 cut(s) 325, 331, 337
BsiHKAI GWGCWC 1 cut(s) 362
BsiSI CCGG 5 cut(s) 317, 329, 335, 341, 635
BslI CCNNNNNNNGG 3 cut(s) 174, 374, 641
BsmAI GTCTC 3 cut(s) 111, 183, 344
BsnI GGCC 2 cut(s) 53, 344
Bso31I GGTCTC 2 cut(s) 183, 344
Bsp1286I GDGCHC 2 cut(s) 87, 362
Bsp143I GATC 2 cut(s) 115, 507
BspACI CCGC 5 cut(s) 129, 132, 141, 303, 323
BspANI GGCC 2 cut(s) 53, 344
BspCNI CTCAG 2 cut(s) 121, 403
BspLI GGNNCC 4 cut(s) 327, 333, 339, 379
BspT107I GGYRCC 3 cut(s) 325, 331, 337
BspTNI GGTCTC 2 cut(s) 183, 344
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 3 cut(s) 328, 334, 340
BsrI ACTGG 2 cut(s) 381, 474
BssAI RCCGGY 3 cut(s) 328, 334, 340
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 2 cut(s) 115, 507
BssSI CACGAG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 150, 342
BstDEI CTNAG 3 cut(s) 108, 399, 411
BstF5I GGATG 5 cut(s) 32, 38, 445, 505, 562
BstKTI GATC 2 cut(s) 118, 510
BstMAI GTCTC 3 cut(s) 111, 183, 344
BstMBI GATC 2 cut(s) 115, 507
BstMWI GCNNNNNNNGC 5 cut(s) 10, 82, 131, 140, 149
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 2 cut(s) 580, 633
BstSLI GKGCMC 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 53, 344
BtsCI GGATG 5 cut(s) 32, 38, 445, 505, 562
BtsIMutI CAGTG 3 cut(s) 277, 388, 481
Cac8I GCNNGC 2 cut(s) 150, 342
Cfr10I RCCGGY 3 cut(s) 328, 334, 340
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 9 cut(s) 47, 53, 76, 112, 214, 234, 344, 360, 633
CviKI_1 RGCY 9 cut(s) 47, 53, 76, 112, 214, 234, 344, 360, 633
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 3 cut(s) 108, 399, 411
DpnI GATC 2 cut(s) 117, 509
DpnII GATC 2 cut(s) 115, 507
EaeI YGGCCR 2 cut(s) 51, 342
Ecl136II GAGCTC 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 362
Eco31I GGTCTC 2 cut(s) 183, 344
Eco53kI GAGCTC 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 362
FaiI YATR 3 cut(s) 171, 435, 565
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 3 cut(s) 132, 135, 303
FokI GGATG 5 cut(s) 19, 25, 452, 512, 569
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 132, 135, 303
FspBI CTAG 1 cut(s) 17
GluI GCNGC 3 cut(s) 132, 135, 303
HaeIII GGCC 2 cut(s) 53, 344
HapII CCGG 5 cut(s) 317, 329, 335, 341, 635
HinfI GANTC 1 cut(s) 560
HpaII CCGG 5 cut(s) 317, 329, 335, 341, 635
HphI GGTGA 3 cut(s) 110, 354, 496
Hpy188I TCNGA 2 cut(s) 291, 369
Hpy188III TCNNGA 1 cut(s) 42
HpyAV CCTTC 4 cut(s) 409, 481, 490, 635
HpyCH4III ACNGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 82, 131, 140, 149
HpyF3I CTNAG 3 cut(s) 108, 399, 411
KroI GCCGGC 1 cut(s) 340
KroNI GCCGGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 2 cut(s) 115, 507
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 421
MalI GATC 2 cut(s) 117, 509
MboI GATC 2 cut(s) 115, 507
MboII GAAGA 5 cut(s) 400, 460, 650, 657, 660
MfeI CAATTG 2 cut(s) 297, 613
MhlI GDGCHC 2 cut(s) 87, 362
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 5 cut(s) 205, 227, 297, 430, 613
MluNI TGGCCA 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 340
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 5 cut(s) 317, 329, 335, 341, 635
MspR9I CCNGG 2 cut(s) 582, 635
MunI CAATTG 2 cut(s) 297, 613
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 5 cut(s) 10, 82, 131, 140, 149
NaeI GCCGGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 635
NdeII GATC 2 cut(s) 115, 507
NgoMIV GCCGGC 1 cut(s) 340
NlaIV GGNNCC 4 cut(s) 327, 333, 339, 379
NmuCI GTSAC 1 cut(s) 421
PdiI GCCGGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 3 cut(s) 133, 136, 304
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 4 cut(s) 327, 333, 339, 379
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 362
SatI GCNGC 3 cut(s) 132, 135, 303
Sau3AI GATC 2 cut(s) 115, 507
ScrFI CCNGG 2 cut(s) 582, 635
SduI GDGCHC 2 cut(s) 87, 362
SetI ASST 6 cut(s) 18, 49, 114, 362, 367, 583
Sse9I AATT 5 cut(s) 205, 227, 297, 430, 613
SsiI CCGC 5 cut(s) 129, 132, 141, 303, 323
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 580, 633
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 4 cut(s) 114, 187, 428, 552
TasI AATT 5 cut(s) 205, 227, 297, 430, 613
TatI WGTACW 1 cut(s) 59
TauI GCSGC 2 cut(s) 134, 305
TfiI GAWTC 1 cut(s) 560
TscAI CASTG 3 cut(s) 277, 388, 481
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 477, 552
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 3 cut(s) 277, 388, 481
XapI RAATTY 1 cut(s) 227
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.