Rmu_sc0000543.1_g000046

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000543.1
OG0000414
Physical Location & Seq
Reverse (-)
218621 .. 219241
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000543.1_g000046.1.cds

Sequence Viewer

Length: 621 bp
atgcatagcacccagttaggtgagagtttcaatgctagcctaaaaccatatgttaagtcagattatgatgtggttcaacttttcaagcactttgacagattgctcaatgataagcggtataaagagttagatgcagagtatgctttgtgctacaagttacctgctattgggatattttcttcaatggtgattaaggctggaaatatttacactaaagctgcatttgaagaattccaaattcagtatgagaagacttttgattacaacttagtcgaatgtattcaagatggtgatgacattgtgtataaagttgcctttaatggtcatccaaaggagagatgtgttagggtgaagaaagaccattcagtctcttgtagttgcaggttgtttgagattgaaggtattttgtaccgccatgcaataaaaatccttactaactacatgaatgtcaaagaaattcctaatcaatatattttaaaaaggtggacaagaaaagcaagatctgaaagagtgaaagacatgtatggccaagacatccaagtagataccaagttacaacaaacatcttggtacaagtctctaagttccatatccaccaagatttcatctcgggttgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

206

Amino Acids

24.13

Weight (kDa)

9.03

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
Acc36I ACCTGC 2 cut(s) 169, 372
AciI CCGC 2 cut(s) 115, 412
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 3 cut(s) 230, 237, 456
AfaI GTAC 2 cut(s) 410, 572
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 7 cut(s) 31, 77, 85, 183, 227, 284, 398
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 373, 582
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 3 cut(s) 230, 237, 456
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 4 cut(s) 32, 199, 302, 361
AsuNHI GCTAGC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 609
BalI TGGCCA 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 373, 582
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 2 cut(s) 169, 372
BglII AGATCT 1 cut(s) 500
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 609
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 121
BmtI GCTAGC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 325, 534
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 373, 582
BsnI GGCC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 609
Bsp143I GATC 1 cut(s) 500
BspACI CCGC 2 cut(s) 115, 412
BspANI GGCC 1 cut(s) 528
BspMI ACCTGC 2 cut(s) 169, 372
BspOI GCTAGC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 13
BssMI GATC 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 268, 581, 618
BstF5I GGATG 2 cut(s) 325, 534
BstKTI GATC 1 cut(s) 503
BstMAI GTCTC 2 cut(s) 373, 582
BstMBI GATC 1 cut(s) 500
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 523
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
BsuRI GGCC 1 cut(s) 528
BtsCI GGATG 2 cut(s) 325, 534
BveI ACCTGC 2 cut(s) 169, 372
Cac8I GCNNGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 409, 571
CviAII CATG 3 cut(s) 416, 442, 520
CviJI RGCY 4 cut(s) 39, 197, 218, 528
CviKI_1 RGCY 4 cut(s) 39, 197, 218, 528
CviQI GTAC 2 cut(s) 409, 571
DdeI CTNAG 3 cut(s) 268, 581, 618
DpnI GATC 1 cut(s) 502
DpnII GATC 1 cut(s) 500
DraI TTTAAA 1 cut(s) 477
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 609
EcoRI GAATTC 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 419, 445, 523
FatI CATG 3 cut(s) 415, 441, 519
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 312, 521
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 528
Hin1II CATG 3 cut(s) 419, 445, 523
HphI GGTGA 4 cut(s) 32, 199, 302, 361
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 2 cut(s) 61, 505
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 1 cut(s) 392
HpyCH4V TGCA 5 cut(s) 4, 134, 221, 381, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 268, 581, 618
Hsp92II CATG 3 cut(s) 419, 445, 523
Kzo9I GATC 1 cut(s) 500
LpnPI CCDG 4 cut(s) 26, 174, 183, 367
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 156, 552
MalI GATC 1 cut(s) 502
MboI GATC 1 cut(s) 500
MboII GAAGA 4 cut(s) 171, 239, 262, 364
MflI RGATCY 1 cut(s) 500
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 3 cut(s) 230, 237, 456
MluNI TGGCCA 1 cut(s) 528
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 528
MseI TTAA 4 cut(s) 54, 192, 318, 476
Msp20I TGGCCA 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 500
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 3 cut(s) 419, 445, 523
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 523
PciI ACATGT 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 220
PscI ACATGT 1 cut(s) 519
PsuI RGATCY 1 cut(s) 500
RsaI GTAC 2 cut(s) 410, 572
RsaNI GTAC 2 cut(s) 409, 571
SaqAI TTAA 4 cut(s) 54, 192, 318, 476
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 500
SetI ASST 6 cut(s) 22, 163, 220, 386, 403, 485
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 3 cut(s) 230, 237, 456
SsiI CCGC 2 cut(s) 115, 412
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 36
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 230, 237, 456
Tru1I TTAA 4 cut(s) 54, 192, 318, 476
Tru9I TTAA 4 cut(s) 54, 192, 318, 476
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 458, 594
XapI RAATTY 3 cut(s) 230, 237, 456
XceI RCATGY 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.