Rmu_ssc0000432.1_g000093

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0000414
Physical Location & Seq
Reverse (-)
328948 .. 329809
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000093.1.cds

Sequence Viewer

Length: 684 bp
atgaaaggggttgtatgtaggcacattatcaaggtccttagcgaagtgatgcaaatcaaagaaattcctgagcattatatcttaaaaagatggacaaaaaaggctcgagctgaaagtgttcaagacatgcatgagcgtgaaattcaaccagaccctaagttgcaacaagcctcttggtacagatctttatgttccacctacattacaatatcaagcagggcttctgaaaatgaaaaggcatacaaattagtcatgacaaatgcagagaagttagcaaaagaagttgaagaattgctacgatctgaaatgaatgctaatgtggatgagaatggtcataaaactcaatccactcctactggacagctcaatgtatatggtaatgtggtgaatgcaaaagggctaaagaagaaggaaacatctaaaggaagaaaacggagaatcaagagtcaagtagagataagcatgaacaaaaataaaaaacaaaggcaacccagtaaaaaagcaatggaggttactcctgatcaaatgaatgatgtatacaagatgacttttgatccaagatgtaatgaagagaatgctactcttgatctaacaaacaatgtagagaatgatgcttctgttataacaaatattgagaagtattgctttggtgctcttctcactggttctctggtatacctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

227

Amino Acids

26.04

Weight (kDa)

9.27

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AccI GTMKAC 2 cut(s) 537, 675
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 2 cut(s) 63, 141
AfaI GTAC 1 cut(s) 179
AgsI TTSAA 3 cut(s) 122, 146, 287
AluBI AGCT 2 cut(s) 110, 364
AluI AGCT 2 cut(s) 110, 364
Alw21I GWGCWC 1 cut(s) 655
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 105
ApoI RAATTY 2 cut(s) 63, 141
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
Bbv12I GWGCWC 1 cut(s) 655
BccI CCATC 1 cut(s) 84
BclI TGATCA 1 cut(s) 520
BfmI CTRYAG 1 cut(s) 680
BglII AGATCT 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 39, 601
BmuI ACTGGG 1 cut(s) 486
Bpu10I CCTNAGC 2 cut(s) 38, 69
BsaBI GATNNNNATC 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 361, 492, 667
Bse3DI GCAATG 1 cut(s) 510
Bse8I GATNNNNATC 1 cut(s) 53
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 53
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 3 cut(s) 361, 492, 667
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 105
BsmI GAATGC 3 cut(s) 316, 394, 580
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 5 cut(s) 182, 299, 520, 553, 586
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 252
BspPI GGATC 1 cut(s) 548
BspQI GCTCTTC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 510
BsrI ACTGG 3 cut(s) 361, 492, 667
BssMI GATC 5 cut(s) 182, 299, 520, 553, 586
BssNAI GTATAC 2 cut(s) 538, 676
Bst1107I GTATAC 2 cut(s) 538, 676
Bst6I CTCTTC 2 cut(s) 564, 660
BstDEI CTNAG 3 cut(s) 38, 69, 156
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 5 cut(s) 185, 302, 523, 556, 589
BstMBI GATC 5 cut(s) 182, 299, 520, 553, 586
BstNSI RCATGY 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 680
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BstZ17I GTATAC 2 cut(s) 538, 676
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 660
CciI TCATGA 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 127, 131, 253, 463
CviJI RGCY 6 cut(s) 104, 110, 170, 221, 364, 400
CviKI_1 RGCY 6 cut(s) 104, 110, 170, 221, 364, 400
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 38, 69, 156
DpnI GATC 5 cut(s) 184, 301, 522, 555, 588
DpnII GATC 5 cut(s) 182, 299, 520, 553, 586
Eam1104I CTCTTC 2 cut(s) 564, 660
EarI CTCTTC 2 cut(s) 564, 660
Eco47I GGWCC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 132
FaeI CATG 4 cut(s) 130, 134, 256, 466
FalI AAGNNNNNCTT 4 cut(s) 205, 237, 629, 661
FatI CATG 4 cut(s) 126, 130, 252, 462
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 2 cut(s) 537, 675
FokI GGATG 1 cut(s) 335
Hin1II CATG 4 cut(s) 130, 134, 256, 466
HinfI GANTC 2 cut(s) 438, 445
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 538, 676
Hpy188I TCNGA 2 cut(s) 226, 304
Hpy188III TCNNGA 6 cut(s) 68, 122, 253, 442, 518, 584
Hpy8I GTNNAC 2 cut(s) 538, 676
HpyAV CCTTC 1 cut(s) 403
HpyCH4V TGCA 5 cut(s) 52, 130, 163, 263, 392
HpyF3I CTNAG 3 cut(s) 38, 69, 156
Hsp92II CATG 4 cut(s) 130, 134, 256, 466
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 182, 299, 520, 553, 586
LguI GCTCTTC 1 cut(s) 660
LpnPI CCDG 8 cut(s) 81, 162, 202, 342, 505, 531, 648, 656
LweI GCATC 2 cut(s) 39, 601
MaeIII GTNAC 1 cut(s) 511
MalI GATC 5 cut(s) 184, 301, 522, 555, 588
MboI GATC 5 cut(s) 182, 299, 520, 553, 586
MboII GAAGA 5 cut(s) 299, 418, 438, 581, 647
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 4 cut(s) 63, 141, 245, 290
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 2 cut(s) 181, 502
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 135
Mva1269I GAATGC 3 cut(s) 316, 394, 580
NdeII GATC 5 cut(s) 182, 299, 520, 553, 586
NlaIII CATG 4 cut(s) 130, 134, 256, 466
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 105
PagI TCATGA 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 3 cut(s) 316, 394, 580
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 438
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
PpuMI RGGWCCY 1 cut(s) 34
PsiI TTATAA 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 34
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PspXI VCTCGAGB 1 cut(s) 105
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 1 cut(s) 83
Sau3AI GATC 5 cut(s) 182, 299, 520, 553, 586
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 1 cut(s) 454
SduI GDGCHC 1 cut(s) 655
SetI ASST 6 cut(s) 36, 112, 200, 366, 513, 681
SfaNI GCATC 2 cut(s) 39, 601
SfcI CTRYAG 1 cut(s) 680
Sfr274I CTCGAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 63, 141, 245, 290
SspI AATATT 1 cut(s) 631
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 63, 141, 245, 290
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 667
TspDTI ATGAA 6 cut(s) 17, 246, 323, 479, 542, 582
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 63, 141
XceI RCATGY 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 105
XmiI GTMKAC 2 cut(s) 537, 675
XmnI GAANNNNTTC 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.