RLG00000035621

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
69389448 .. 69390354
907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035621

Sequence Viewer

Length: 468 bp
ATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAGAAGGCAAAAGGTTTGAAGAAGAAAAACAATTGTAAAGGTCACAAAAAACGCCCTAAGGCTTGGCATGAGAATATAGGCAAGGGAAAGAAAAAATCTTCTAGGAAAGATAATTCAATTCAAGAATCAAATAAGGATCAAGAAGCTCAACCATCAAGAAAGAGGAATAAGAAATTGTCTAGCAAGGATCAATTAGTACCTCAACAATCCCAGGATCAAACTCAACCATCAAAAAAGAGAAATACAAGATCGTCTAATAAGGATCAATCATTACCTCAAGCATCTCAGAATCAAGAAGCTGAACCTTCAAGAAAGAGAAATAAGAAATCCTCTACAGATCAATCACTACGTCAAGACTCTCAGGATCAAGGAGCTCAACCATCAAGCAAAAGAAAGAAACAATTGTCTACTCGTTTAGTTGGTTATCATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

17.72

Weight (kDa)

10.47

Isoelectric Point (pI)

94.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 440
AclWI GGATC 5 cut(s) 177, 228, 255, 303, 405
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 6 cut(s) 8, 23, 52, 150, 155, 342
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 4 cut(s) 27, 179, 332, 407
AluI AGCT 4 cut(s) 27, 179, 332, 407
Alw21I GWGCWC 1 cut(s) 409
AlwI GGATC 5 cut(s) 177, 228, 255, 303, 405
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 409
BccI CCATC 3 cut(s) 193, 268, 421
BciT130I CCWGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 135, 213
BfmI CTRYAG 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 243
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 332, 407
BsiHKAI GWGCWC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
BspCNI CTCAG 2 cut(s) 331, 406
BspPI GGATC 5 cut(s) 177, 228, 255, 303, 405
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
Bst2UI CCWGG 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 90, 318, 393
BstKTI GATC 7 cut(s) 172, 223, 250, 284, 298, 373, 400
BstMBI GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 101
CviJI RGCY 5 cut(s) 27, 95, 179, 332, 407
CviKI_1 RGCY 5 cut(s) 27, 95, 179, 332, 407
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 3 cut(s) 90, 318, 393
DpnI GATC 7 cut(s) 171, 222, 249, 283, 297, 372, 399
DpnII GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
Ecl136II GAGCTC 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 17
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 409
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 102, 110, 462, 466
FatI CATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 409
FspBI CTAG 2 cut(s) 135, 213
Hin1II CATG 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 3 cut(s) 158, 322, 389
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 2 cut(s) 36, 321
Hpy188III TCNNGA 8 cut(s) 8, 155, 173, 189, 326, 342, 386, 395
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 2 cut(s) 31, 348
HpyCH4IV ACGT 1 cut(s) 382
HpyF3I CTNAG 3 cut(s) 90, 318, 393
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 3 cut(s) 230, 257, 380
LweI GCATC 1 cut(s) 323
MaeI CTAG 2 cut(s) 135, 213
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 74
MalI GATC 7 cut(s) 171, 222, 249, 283, 297, 372, 399
MboI GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
MboII GAAGA 3 cut(s) 64, 67, 123
MfeI CAATTG 2 cut(s) 64, 434
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 7 cut(s) 18, 64, 145, 150, 206, 224, 434
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 189, 243, 318, 373
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 2 cut(s) 64, 434
MvaI CCWGG 1 cut(s) 245
NdeII GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
NlaIII CATG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 158, 322
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 409
Sau3AI GATC 7 cut(s) 169, 220, 247, 281, 295, 370, 397
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 7 cut(s) 18, 64, 145, 150, 206, 224, 434
SspMI CTAG 2 cut(s) 135, 213
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 385
TasI AATT 7 cut(s) 18, 64, 145, 150, 206, 224, 434
TfiI GAWTC 2 cut(s) 158, 322
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 2 cut(s) 135, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.