Rmu_sc0003850.1_g000002

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003850.1
OG0000414
Physical Location & Seq
Reverse (-)
9512 .. 10531
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003850.1_g000002.1.cds

Sequence Viewer

Length: 1020 bp
atggatattgcattgggtgcaacagatgttaatgtagagaattttgattttgatttggaattggattggaaaccaagaaaaggaatggagtttgattatgaacaagcagcttattacttctacaatagatatggaggaaaagaggggtttagtattagaaggaaaagtcatgctaagaataagaaaactagtgaaaccacttcaagagtatttgtctgctgtaaggaaggtattcgatccaaatataagagggattacatgattagaaaatctagagcagagacaagaccaggttgccatgctgaactttatattaaattgaatagggagaacaataagttctttgttacccattttgttgaagagcacaatcatcctcttgtggtgaaagaatattcccacaagcttcctttgcaacagaaagtacaagactgtcaaggcattgatatagacttagcacacgattctagaattgatgtcacgtctctatatgagtttatgggtaagcaagcaggtggaagagatgttgttgggtatacaaaacaagatatgaaaaattaccttagatcaaagagacaaagaagcttggagtatggagaagctggatatattatgaaatatttttcagaccaaacattggaaaacccttcattctaccatgctgtgcaattagacagtgaggagcaaataacaaacttattttgggcagatgctaaaatgatcattaattatggccaatttggggatgttgttaattttgatatgacatacaagattaacaaatttaatcgacctcttgttgtgttcgttggattcaatcaccaccgtaagactattatatttggggtggctttaataatgtatgatgaaacagtagattcatttatatggttgtttgagaccttttttagggcaatgtctggaaaggctccaaagacaatatttacaaatcaagatgctgcaatggcaaaggctcttcgacatgttatgccagatgcatatcataggctttgcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

339

Amino Acids

39.81

Weight (kDa)

8.82

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 503
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 536
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 2 cut(s) 40, 782
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 4 cut(s) 80, 637, 742, 909
AflIII ACRYGT 1 cut(s) 982
AgsI TTSAA 4 cut(s) 204, 322, 362, 817
AhlI ACTAGT 1 cut(s) 188
AjiI CACGTC 1 cut(s) 483
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 110, 406, 585, 602
AluI AGCT 4 cut(s) 110, 406, 585, 602
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 4 cut(s) 275, 489, 568, 893
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 733
ApeKI GCWGC 2 cut(s) 107, 959
ApoI RAATTY 2 cut(s) 40, 782
AseI ATTAAT 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 397, 812
BalI TGGCCA 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 119, 946
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 275, 489, 568, 893
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 3 cut(s) 189, 273, 468
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 2 cut(s) 108, 960
BlsI GCNGC 2 cut(s) 109, 961
Bme1390I CCNGG 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 930
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 700, 946, 985
BsaBI GATNNNNATC 1 cut(s) 999
BsaI GGTCTC 1 cut(s) 893
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 637, 742, 909
Bse3DI GCAATG 2 cut(s) 921, 969
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 373, 751
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 4 cut(s) 80, 637, 742, 909
BseMI GCAATG 2 cut(s) 921, 969
BseRI GAGGAG 1 cut(s) 695
BseXI GCAGC 2 cut(s) 119, 946
BshFI GGCC 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 369
BslI CCNNNNNNNGG 4 cut(s) 80, 637, 742, 909
BsmAI GTCTC 4 cut(s) 275, 489, 568, 893
BsmBI CGTCTC 1 cut(s) 489
BsnI GGCC 1 cut(s) 735
Bso31I GGTCTC 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 236, 566, 720
BspANI GGCC 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 930
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 2 cut(s) 357, 981
BspTNI GGTCTC 1 cut(s) 893
BsrDI GCAATG 2 cut(s) 921, 969
BssMI GATC 3 cut(s) 236, 566, 720
BssNAI GTATAC 1 cut(s) 537
Bst1107I GTATAC 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 434, 677, 827, 874
Bst6I CTCTTC 3 cut(s) 357, 514, 981
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 174, 454, 563
BstENI CCTNNNNNAGG 1 cut(s) 907
BstF5I GGATG 2 cut(s) 373, 751
BstKTI GATC 3 cut(s) 239, 569, 723
BstMAI GTCTC 4 cut(s) 275, 489, 568, 893
BstMBI GATC 3 cut(s) 236, 566, 720
BstMWI GCNNNNNNNGC 3 cut(s) 17, 412, 965
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 986
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 119, 946
BstZ17I GTATAC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 735
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 2 cut(s) 373, 751
BtsIMutI CAGTG 1 cut(s) 682
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 510
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 425
CviAII CATG 5 cut(s) 170, 259, 299, 659, 983
CviJI RGCY 9 cut(s) 110, 406, 585, 602, 735, 851, 929, 974, 1009
CviKI_1 RGCY 9 cut(s) 110, 406, 585, 602, 735, 851, 929, 974, 1009
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 3 cut(s) 174, 454, 563
DpnI GATC 3 cut(s) 238, 568, 722
DpnII GATC 3 cut(s) 236, 566, 720
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 3 cut(s) 357, 514, 981
EarI CTCTTC 3 cut(s) 357, 514, 981
Eco31I GGTCTC 1 cut(s) 893
EcoNI CCTNNNNNAGG 1 cut(s) 907
EcoRII CCWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 1000
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 5 cut(s) 173, 262, 302, 662, 986
FatI CATG 5 cut(s) 169, 258, 298, 658, 982
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 2 cut(s) 108, 960
FokI GGATG 2 cut(s) 360, 758
Fsp4HI GCNGC 2 cut(s) 108, 960
FspBI CTAG 3 cut(s) 189, 273, 468
GluI GCNGC 2 cut(s) 108, 960
HaeIII GGCC 1 cut(s) 735
Hin1II CATG 5 cut(s) 173, 262, 302, 662, 986
HindIII AAGCTT 2 cut(s) 404, 583
HinfI GANTC 3 cut(s) 464, 813, 878
HphI GGTGA 2 cut(s) 397, 812
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 5 cut(s) 204, 273, 468, 921, 953
Hpy8I GTNNAC 1 cut(s) 537
HpyAV CCTTC 3 cut(s) 153, 221, 657
HpyCH4III ACNGT 4 cut(s) 434, 677, 827, 874
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 7 cut(s) 11, 20, 415, 667, 962, 998, 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 412, 965
HpyF3I CTNAG 3 cut(s) 174, 454, 563
HpySE526I ACGT 1 cut(s) 482
Hsp92II CATG 5 cut(s) 173, 262, 302, 662, 986
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 3 cut(s) 236, 566, 720
LguI GCTCTTC 2 cut(s) 357, 981
LmnI GCTCC 2 cut(s) 682, 934
LpnPI CCDG 6 cut(s) 276, 303, 498, 588, 906, 1005
Lsp1109I GCAGC 2 cut(s) 119, 946
LweI GCATC 3 cut(s) 700, 946, 985
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 3 cut(s) 189, 273, 468
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 346, 478
MalI GATC 3 cut(s) 238, 568, 722
MboI GATC 3 cut(s) 236, 566, 720
MboII GAAGA 3 cut(s) 374, 531, 968
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 735
MluNI TGGCCA 1 cut(s) 735
MmeI TCCRAC 1 cut(s) 790
MnlI CCTC 6 cut(s) 128, 136, 243, 387, 673, 804
Mox20I TGGCCA 1 cut(s) 735
Mph1103I ATGCAT 1 cut(s) 1000
MroXI GAANNNNTTC 1 cut(s) 231
MscI TGGCCA 1 cut(s) 735
MseI TTAA 7 cut(s) 30, 315, 726, 753, 777, 786, 854
MslI CAYNNNNRTG 1 cut(s) 886
Msp20I TGGCCA 1 cut(s) 735
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 17, 412, 965
NdeII GATC 3 cut(s) 236, 566, 720
NlaIII CATG 5 cut(s) 173, 262, 302, 662, 986
NlaIV GGNNCC 1 cut(s) 930
NmuCI GTSAC 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 1000
NspI RCATGY 1 cut(s) 986
PaqCI CACCTGC 1 cut(s) 503
PciI ACATGT 1 cut(s) 982
PciSI GCTCTTC 2 cut(s) 357, 981
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 3 cut(s) 464, 813, 878
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 2 cut(s) 109, 961
PscI ACATGT 1 cut(s) 982
PshBI ATTAAT 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 930
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 886
SapI GCTCTTC 2 cut(s) 357, 981
SaqAI TTAA 7 cut(s) 30, 315, 726, 753, 777, 786, 854
SatI GCNGC 2 cut(s) 108, 960
Sau3AI GATC 3 cut(s) 236, 566, 720
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 369
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 3 cut(s) 700, 946, 985
SmiMI CAYNNNNRTG 1 cut(s) 886
SpeI ACTAGT 1 cut(s) 188
SspI AATATT 3 cut(s) 395, 620, 942
SspMI CTAG 3 cut(s) 189, 273, 468
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 434, 677, 827, 874
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 235, 790, 979
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 3 cut(s) 464, 813, 878
Tru1I TTAA 7 cut(s) 30, 315, 726, 753, 777, 786, 854
Tru9I TTAA 7 cut(s) 30, 315, 726, 753, 777, 786, 854
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 107, 959
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 6 cut(s) 114, 566, 629, 639, 870, 882
TspRI CASTG 1 cut(s) 682
Van91I CCANNNNNTGG 1 cut(s) 637
VspI ATTAAT 1 cut(s) 726
XagI CCTNNNNNAGG 1 cut(s) 907
XapI RAATTY 2 cut(s) 40, 782
XbaI TCTAGA 2 cut(s) 272, 467
XceI RCATGY 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 3 cut(s) 189, 273, 468
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.