Rmu_sc0007059.1_g000007

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007059.1
OG0000414
Physical Location & Seq
Forward (+)
39919 .. 41197
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007059.1_g000007.1.cds

Sequence Viewer

Length: 876 bp
atggataattcattgggtgctacagacattgatattgagaattctgatttggagttggattggaaacctagaaaaggaatggagtttgattctgaacaagcagcttatgactcctacaatagatatggaggaaaaaaggggtttagtattagaagggagactcatggaggaacaataagttctttgttagcgattttgttgaagagcacaatcatcctcttgtggggaaagaatgttcccacatgctaccttcgcaacggaaagaggaacaataagttctttgttagcgattttgttgaagagcacaatcatcctcttgtggggaaagaatgttcccacatgctaccttcacaacggaaagtacaagactctcaaggcattgacatagacttagcacacgattctggaattggtgtgacttctctatatgaattgatggatcaaacattggaaaacccttcattctaccgtgctatgcaattagatagtgaggagcaaataacaaacttattttgggcagatgctaaaatgatcattgattatggccaatttggggatgttgttagttttgatacaacatacaaggttaacaaatctaatcgacctcttgttgtgtttgtcggattcaatcatcaccgcgagactattatatttggagtggctctaatgtatgataaaacagccgattcatttatatggttgtttgagacatttttgagggaaatgtctggaaaggctccaaagacaatatttacatatcaagatgctgcaatggcaaaggctcttcgacatgttatgcctgatgcatatcataggctttgcaaatggcatatgatggaaaatgccataaagcatggacatagttttttgacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

291

Amino Acids

33.36

Weight (kDa)

6.05

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 639
AciI CCGC 1 cut(s) 637
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 4 cut(s) 74, 223, 320, 553
AflIII ACRYGT 1 cut(s) 790
AgsI TTSAA 3 cut(s) 202, 299, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AloI GAACNNNNNNTCC 4 cut(s) 219, 251, 316, 348
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw21I GWGCWC 2 cut(s) 209, 306
Alw26I GTCTC 3 cut(s) 152, 635, 701
AlwI GGATC 1 cut(s) 447
AoxI GGCC 1 cut(s) 544
ApeKI GCWGC 2 cut(s) 101, 767
ApoI RAATTY 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 626
BalI TGGCCA 1 cut(s) 546
Bbv12I GWGCWC 2 cut(s) 209, 306
BbvI GCAGC 2 cut(s) 113, 754
BccI CCATC 2 cut(s) 430, 829
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 3 cut(s) 152, 635, 701
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 102, 768
BlsI GCNGC 2 cut(s) 103, 769
BmiI GGNNCC 1 cut(s) 738
BmsI GCATC 3 cut(s) 511, 754, 793
BpuEI CTTGAG 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 807
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 223, 320, 553
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 807
BseGI GGATG 3 cut(s) 213, 310, 562
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 4 cut(s) 74, 223, 320, 553
BseMI GCAATG 1 cut(s) 777
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 113, 754
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 1 cut(s) 546
BsiHKAI GWGCWC 2 cut(s) 209, 306
BslI CCNNNNNNNGG 4 cut(s) 74, 223, 320, 553
BsmAI GTCTC 3 cut(s) 152, 635, 701
BsnI GGCC 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 209, 306
Bsp143I GATC 2 cut(s) 439, 531
BspACI CCGC 1 cut(s) 637
BspANI GGCC 1 cut(s) 546
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 1 cut(s) 738
BspPI GGATC 1 cut(s) 447
BspQI GCTCTTC 3 cut(s) 197, 294, 789
BsrDI GCAATG 1 cut(s) 777
BssMI GATC 2 cut(s) 439, 531
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 3 cut(s) 197, 294, 789
BstDEI CTNAG 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 213, 310, 562
BstFNI CGCG 1 cut(s) 639
BstKTI GATC 2 cut(s) 442, 534
BstMAI GTCTC 3 cut(s) 152, 635, 701
BstMBI GATC 2 cut(s) 439, 531
BstMWI GCNNNNNNNGC 2 cut(s) 252, 773
BstNSI RCATGY 3 cut(s) 246, 343, 794
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 113, 754
BsuRI GGCC 1 cut(s) 546
BtsCI GGATG 3 cut(s) 213, 310, 562
Csp6I GTAC 1 cut(s) 362
CviAII CATG 5 cut(s) 164, 243, 340, 791, 854
CviJI RGCY 7 cut(s) 104, 546, 662, 683, 737, 782, 817
CviKI_1 RGCY 7 cut(s) 104, 546, 662, 683, 737, 782, 817
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 391
DpnI GATC 2 cut(s) 441, 533
DpnII GATC 2 cut(s) 439, 531
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 3 cut(s) 197, 294, 789
EarI CTCTTC 3 cut(s) 197, 294, 789
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 808
FaeI CATG 5 cut(s) 167, 246, 343, 794, 857
FatI CATG 5 cut(s) 163, 242, 339, 790, 853
FauNDI CATATG 1 cut(s) 831
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 102, 768
FokI GGATG 3 cut(s) 200, 297, 569
Fsp4HI GCNGC 2 cut(s) 102, 768
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 102, 768
HaeIII GGCC 1 cut(s) 546
Hin1II CATG 5 cut(s) 167, 246, 343, 794, 857
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 7 cut(s) 89, 110, 160, 368, 401, 624, 686
HpaI GTTAAC 1 cut(s) 589
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 3 cut(s) 46, 94, 623
Hpy188III TCNNGA 3 cut(s) 405, 729, 761
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 4 cut(s) 147, 260, 357, 468
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 4 cut(s) 478, 770, 806, 822
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 773
HpyF3I CTNAG 1 cut(s) 391
Hsp92II CATG 5 cut(s) 167, 246, 343, 794, 857
Ksp22I TGATCA 1 cut(s) 531
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 2 cut(s) 439, 531
LguI GCTCTTC 3 cut(s) 197, 294, 789
LmnI GCTCC 2 cut(s) 493, 742
LpnPI CCDG 3 cut(s) 390, 714, 813
Lsp1109I GCAGC 2 cut(s) 113, 754
LweI GCATC 3 cut(s) 511, 754, 793
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 441, 533
MboI GATC 2 cut(s) 439, 531
MboII GAAGA 3 cut(s) 214, 311, 776
MhlI GDGCHC 2 cut(s) 209, 306
MlsI TGGCCA 1 cut(s) 546
MluCI AATT 6 cut(s) 7, 40, 408, 431, 479, 548
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 3 cut(s) 104, 154, 362
MmeI TCCRAC 2 cut(s) 36, 601
MnlI CCTC 8 cut(s) 122, 161, 227, 258, 324, 484, 615, 711
Mox20I TGGCCA 1 cut(s) 546
Mph1103I ATGCAT 1 cut(s) 808
MscI TGGCCA 1 cut(s) 546
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 694
Msp20I TGGCCA 1 cut(s) 546
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 252, 773
NdeI CATATG 1 cut(s) 831
NdeII GATC 2 cut(s) 439, 531
NlaIII CATG 5 cut(s) 167, 246, 343, 794, 857
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 3 cut(s) 246, 343, 794
PciI ACATGT 1 cut(s) 790
PciSI GCTCTTC 3 cut(s) 197, 294, 789
PfeI GAWTC 4 cut(s) 89, 401, 624, 686
PkrI GCNGC 2 cut(s) 103, 769
PleI GAGTC 3 cut(s) 104, 154, 362
PpsI GAGTC 3 cut(s) 104, 154, 362
PscI ACATGT 1 cut(s) 790
PspN4I GGNNCC 1 cut(s) 738
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 694
SapI GCTCTTC 3 cut(s) 197, 294, 789
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 102, 768
Sau3AI GATC 2 cut(s) 439, 531
SchI GAGTC 3 cut(s) 104, 154, 362
SduI GDGCHC 2 cut(s) 209, 306
SetI ASST 6 cut(s) 70, 106, 252, 349, 588, 607
SfaNI GCATC 3 cut(s) 511, 754, 793
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 6 cut(s) 7, 40, 408, 431, 479, 548
SsiI CCGC 1 cut(s) 637
SspI AATATT 1 cut(s) 750
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 601, 787
TasI AATT 6 cut(s) 7, 40, 408, 431, 479, 548
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 4 cut(s) 89, 401, 624, 686
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 101, 767
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 444, 450, 678
TspGWI ACGGA 2 cut(s) 273, 370
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 40
XceI RCATGY 3 cut(s) 246, 343, 794
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.